PDB entry 6rip

View 6rip on RCSB PDB site
Description: cryo-em structure of e. coli rna polymerase backtracked elongation complex in swiveled state
Deposited on 2019-04-24, released 2019-07-03
The last revision was dated 2019-12-18, with a file datestamp of 2019-12-13.
Experiment type: EM
Resolution: 3.4 Å
R-factor: N/A
AEROSPACI score: 0.1 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: DNA-directed RNA polymerase subunit alpha
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Gene: rpoA, pez, phs, sez, b3295, JW3257
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: DNA-directed RNA polymerase subunit alpha
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Gene: rpoA, pez, phs, sez, b3295, JW3257
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: DNA-directed RNA polymerase subunit beta
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Gene: rpoB, groN, nitB, rif, ron, stl, stv, tabD, b3987, JW3950
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: DNA-directed RNA polymerase subunit beta'
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Gene: rpoC, tabB, b3988, JW3951
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: DNA-directed RNA polymerase subunit omega
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Gene: rpoZ, b3649, JW3624
    Database cross-references and differences (RAF-indexed):
  • Chain 'N':
    Compound: non-template DNA
    Species: Escherichia coli, synthetic [TaxId:562]
  • Chain 'R':
    Compound: RNA
    Species: Escherichia coli, synthetic [TaxId:562]
  • Chain 'T':
    Compound: Template DNA
    Species: Escherichia coli, synthetic [TaxId:562]
  • Heterogens: ZN, MG

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6ripA (A:)
    mqgsvteflkprlvdieqvssthakvtleplergfghtlgnalrrillssmpgcavteve
    idgvlheystkegvqedileillnlkglavrvqgkdeviltlnksgigpvtaadithdgd
    veivkpqhvichltdenasismrikvqrgrgyvpastrihseederpigrllvdacyspv
    eriaynveaarveqrtdldklviemetngtidpeeairraatilaeqleafvdlrdvrqp
    evkeekpefdpillrpvddleltvrsanclkaeaihyigdlvqrtevellktpnlgkksl
    teikdvlasrglslgmrlenwppasiade
    

    Sequence, based on observed residues (ATOM records):
    >6ripA (A:)
    eflkprlvdieqvssthakvtleplergfghtlgnalrrillssmpgcavteveidgvlh
    eystkegvqedileillnlkglavrvqgkdeviltlnksgigpvtaadithdgdveivkp
    qhvichltdenasismrikvqrgrgyvpastrihseederpigrllvdacyspveriayn
    veaarveqrtdldklviemetngtidpeeairraatilaeqleafvdl
    

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6ripB (B:)
    mqgsvteflkprlvdieqvssthakvtleplergfghtlgnalrrillssmpgcavteve
    idgvlheystkegvqedileillnlkglavrvqgkdeviltlnksgigpvtaadithdgd
    veivkpqhvichltdenasismrikvqrgrgyvpastrihseederpigrllvdacyspv
    eriaynveaarveqrtdldklviemetngtidpeeairraatilaeqleafvdlrdvrqp
    evkeekpefdpillrpvddleltvrsanclkaeaihyigdlvqrtevellktpnlgkksl
    teikdvlasrglslgmrlenwppasiade
    

    Sequence, based on observed residues (ATOM records):
    >6ripB (B:)
    svteflkprlvdieqvssthakvtleplergfghtlgnalrrillssmpgcavteveidg
    vlheystkegvqedileillnlkglavrvqgkdeviltlnksgigpvtaadithdgdvei
    vkpqhvichltdenasismrikvqrgrgyvpastrihseederpigrllvdacyspveri
    aynveaarveqrtdldklviemetngtidpeeairraatilaeqleafv
    

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6ripC (C:)
    mvysytekkrirkdfgkrpqvldvpyllsiqldsfqkfieqdpegqygleaafrsvfpiq
    sysgnselqyvsyrlgepvfdvqecqirgvtysaplrvklrlviyereapegtvkdikeq
    evymgeiplmtdngtfvingtervivsqlhrspgvffdsdkgkthssgkvlynariipyr
    gswldfefdpkdnlfvridrrrklpatiilralnytteqildlffekvifeirdnklqme
    lvperlrgetasfdieangkvyvekgrritarhirqlekddvklievpveyiagkvvakd
    yidestgelicaanmelsldllaklsqsghkrietlftndldhgpyisetlrvdptndrl
    salveiyrmmrpgepptreaaeslfenlffsedrydlsavgrmkfnrsllreeiegsgil
    skddiidvmkklidirngkgevddidhlgnrrirsvgemaenqfrvglvrveravkerls
    lgdldtlmpqdminakpisaavkeffgssqlsqfmdqnnplseithkrrisalgpggltr
    eragfevrdvhpthygrvcpietpegpniglinslsvyaqtneygfletpyrkvtdgvvt
    deihylsaieegnyviaqansnldeeghfvedlvtcrskgesslfsrdqvdymdvstqqv
    vsvgaslipflehddanralmganmqrqavptlradkplvgtgmeravavdsgvtavakr
    ggvvqyvdasrivikvnedemypgeagidiynltkytrsnqntcinqmpcvslgepverg
    dvladgpstdlgelalgqnmrvafmpwngynfedsilvservvqedrfttihiqelacvs
    rdtklgpeeitadipnvgeaalskldesgivyigaevtggdilvgkvtpkgetqltpeek
    llraifgekasdvkdsslrvpngvsgtvidvqvftrdgvekdkraleieemqlkqakkdl
    seelqileaglfsriravlvaggveaekldklprdrwlelgltdeekqnqleqlaeqyde
    lkhefekkleakrrkitqgddlapgvlkivkvylavkrriqpgdkmagrhgnkgviskin
    piedmpydengtpvdivlnplgvpsrmnigqilethlgmaakgigdkinamlkqqqevak
    lrefiqraydlgadvrqkvdlstfsdeevmrlaenlrkgmpiatpvfdgakeaeikellk
    lgdlptsgqirlydgrtgeqferpvtvgymymlklnhlvddkmharstgsyslvtqqplg
    gkaqfggqrfgemevwaleaygaaytlqemltvksddvngrtkmyknivdgnhqmepgmp
    esfnvllkeirslginielede
    

    Sequence, based on observed residues (ATOM records):
    >6ripC (C:)
    vysytekkrirkdfgkrpqvldvpyllsiqldsfqkfieqdpegqygleaafrsvfpiqs
    ysgnselqyvsyrlgepvfdvqecqirgvtysaplrvklrlviyereapegtvkdikeqe
    vymgeiplmtdngtfvingtervivsqlhrspgvffdsdkgkthssgkvlynariipyrg
    swldfefdpkdnlfvridrrrklpatiilralnytteqildlffekvifeirdnklqmel
    vperlrgetasfdieangkvyvekgrritarhirqlekddvklievpveyiagkvvakdy
    idestgelicaanmelsldllaklsqsghkrietlftndldhgpyisetlrvdptndrls
    alveiyrmmrpgepptreaaeslfenlffsedrydlsavgrmkfnrsllreeiegsgils
    kddiidvmkklidirngkgevddidhlgnrrirsvgemaenqfrvglvrveravkerlsl
    gdldtlmpqdminakpisaavkeffgssqlsqfmdqnnplseithkrrisalgpggltre
    ragfevrdvhpthygrvcpietpegpniglinslsvyaqtneygfletpyrkvtdgvvtd
    eihylsaieegnyviaqansnldeeghfvedlvtcrskgesslfsrdqvdymdvstqqvv
    svgaslipflehddanralmganmqrqavptlradkplvgtgmeravavdsgvtavakrg
    gvvqyvdasrivikvnedemypgeagidiynltkytrsnqntcinqmpcvslgepvergd
    vladgpstdlgelalgqnmrvafmpwngynfedsilvservvqedrfttihiqelacvsr
    dtklgpeeitadipnvgeaalskldesgivyigaevtggdilvgkvtpkvkdsslrvpng
    vsgtvidvqvftrdgvekdkraleieemqlkqakkdlseelqileaglfsriravlvagg
    veaekldklprdrwlelgltdeekqnqleqlaeqydelkhefekkleakrrkitqgddla
    pgvlkivkvylavkrriqpgdkmagrhgnkgviskinpiedmpydengtpvdivlnplgv
    psrmnigqilethlgmaakgigdkinamlkqqqevaklrefiqraydlgadvrqkvdlst
    fsdeevmrlaenlrkgmpiatpvfdgakeaeikellklgdlptsgqirlydgrtgeqfer
    pvtvgymymlklnhlvddkmharstgsyslvtqqplggkaqfggqrfgemevwaleayga
    aytlqemltvksddvngrtkmyknivdgnhqmepgmpesfnvllkeirslginielede
    

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6ripD (D:)
    mkdllkflkaqtkteefdaikialaspdmirswsfgevkkpetinyrtfkperdglfcar
    ifgpvkdyeclcgkykrlkhrgvicekcgvevtqtkvrrermghielasptahiwflksl
    psrigllldmplrdiervlyfesyvvieggmtnlerqqilteeqyldaleefgdefdakm
    gaeaiqallksmdleqeceqlreelnetnsetkrkkltkriklleafvqsgnkpewmilt
    vlpvlppdlrplvpldggrfatsdlndlyrrvinrnnrlkrlldlaapdiivrnekrmlq
    eavdalldngrrgraitgsnkrplksladmikgkqgrfrqnllgkrvdysgrsvitvgpy
    lrlhqcglpkkmalelfkpfiygklelrglattikaakkmvereeavvwdildevirehp
    vllnraptlhrlgiqafepvliegkaiqlhplvcaaynadfdgdqmavhvpltleaqlea
    ralmmstnnilspangepiivpsqdvvlglyymtrdcvnakgegmvltgpkeaerlyrsg
    laslharvkvriteyekdangelvaktslkdttvgrailwmivpkglpysivnqalgkka
    iskmlntcyrilglkptvifadqimytgfayaarsgasvgiddmvipekkheiiseaeae
    vaeiqeqfqsglvtagerynkvidiwaaandrvskammdnlqtetvinrdgqeekqvsfn
    siymmadsgargsaaqirqlagmrglmakpdgsiietpitanfreglnvlqyfisthgar
    kgladtalktansgyltrrlvdvaqdlvvteddcgthegimmtpvieggdvkeplrdrvl
    grvtaedvlkpgtadilvprntllheqwcdlleensvdavkvrsvvscdtdfgvcahcyg
    rdlarghiinkgeaigviaaqsigepgtqltmrtfhiggaasraaaessiqvknkgsikl
    snvksvvnssgklvitsrntelklidefgrtkesykvpygavlakgdgeqvaggetvanw
    dphtmpvitevsgfvrftdmidgqtitrqtdeltglsslvvldsaertaggkdlrpalki
    vdaqgndvlipgtdmpaqyflpgkaivqledgvqissgdtlaripqesggtkditgglpr
    vadlfearrpkepailaeisgivsfgketkgkrrlvitpvdgsdpyeemipkwrqlnvfe
    gervergdvisdgpeaphdilrlrgvhavtryivnevqdvyrlqgvkindkhievivrqm
    lrkativnagssdflegeqveysrvkianreleangkvgatysrdllgitkaslatesfi
    saasfqettrvlteaavagkrdelrglkenvivgrlipagtgyayhqdrmrrraageapa
    apqvtaedasaslaellnaglggsdne
    

    Sequence, based on observed residues (ATOM records):
    >6ripD (D:)
    efdaikialaspdmirswsfgevkkpetinyrtfkperdglfcarifgpvkdyeclcgky
    krlkhrgvicekcgvevtqtkvrrermghielasptahiwflkslpsrigllldmplrdi
    ervlyfesyvvieggmtnlerqqilteeqyldaleefgdefdakmgaeaiqallksmdle
    qeceqlreelnetnsetkrkkltkriklleafvqsgnkpewmiltvlpvlppdlrplvpl
    dggrfatsdlndlyrrvinrnnrlkrlldlaapdiivrnekrmlqeavdalldngrrgra
    itgsnkrplksladmikgkqgrfrqnllgkrvdysgrsvitvgpylrlhqcglpkkmale
    lfkpfiygklelrglattikaakkmvereeavvwdildevirehpvllnraptlhrlgiq
    afepvliegkaiqlhplvcaaynadfdgdqmavhvpltleaqlearalmmstnnilspan
    gepiivpsqdvvlglyymtrdcvnakgegmvltgpkeaerlyrsglaslharvkvritey
    ekdangelvaktslkdttvgrailwmivpkglpysivnqalgkkaiskmlntcyrilglk
    ptvifadqimytgfayaarsgasvgiddmvipekkheiiseaeaevaeiqeqfqsglvta
    gerynkvidiwaaandrvskammdnlqtetvinrdgqeekqvsfnsiymmadsgargsaa
    qirqlagmrglmakpdgsiietpitanfreglnvlqyfisthgarkgladtalktansgy
    ltrrlvdvaqdlvvteddcgthegimmtpvieggdvkeplrdrvlgrvtaedvlkpgtad
    ilvprntllheqwcdlleensvdavkvrsvvscdtdfgvcahcygrdlarghiinkgeai
    gviaaqsigepgtqltmrtfssiqvknkgsiklsnvksvvnssgklvitsrntelklide
    fgrtkesykvpygavlakgdgeqvaggetvanwdphtmpvitevsgfvrftdmidgqtit
    rqtdeltglsslvvldsaertaggkdlrpalkivdaqgndvlipgtdmpaqyflpgkaiv
    qledgvqissgdtlaritgglprvadlfearrpkepailaeisgivsfgketkgkrrlvi
    tpvdgsdpyeemipkwrqlnvfegervergdvisdgpeaphdilrlrgvhavtryivnev
    qdvyrlqgvkindkhievivrqmlrkativnagssdflegeqveysrvkianreleangk
    vgatysrdllgitkaslatesfisaasfqettrvlteaavagkrdelrglkenvivgrli
    pagtgyayhqdrmrrr
    

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6ripE (E:)
    marvtvqdavekignrfdlvlvaarrarqmqvggkdplvpeendkttvialreieeglin
    nqildvrerqeqqeqeaaelqavtaiaegrr
    

    Sequence, based on observed residues (ATOM records):
    >6ripE (E:)
    arvtvqdavekignrfdlvlvaarrarqmqvggkdplvpeendkttvialreieeglinn
    qildvrerqeqqe
    

  • Chain 'N':
    No sequence available.

  • Chain 'R':
    No sequence available.

  • Chain 'T':
    No sequence available.