PDB entry 6rhw
View 6rhw on RCSB PDB site
Description: Crystal structure of human CD11b I-domain (CD11b-I) in complex with Staphylococcus aureus octameric bi-component leukocidin LukGH
Class: toxin
Keywords: LEUKOCIDIN, PORE-FORMING TOXIN, OCTAMER, receptor, complex, TOXIN
Deposited on
2019-04-23, released
2019-12-18
The last revision prior to the SCOPe 2.08 freeze date was dated
2020-01-15, with a file datestamp of
2020-01-10.
Experiment type: XRAY
Resolution: 2.75 Å
R-factor: N/A
AEROSPACI score: 0.18
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'C':
Compound: Integrin alpha-M
Species: Homo sapiens [TaxId:9606]
Gene: ITGAM, CD11B, CR3A
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d6rhwc_ - Chain 'G':
Compound: Beta-channel forming cytolysin
Species: Staphylococcus aureus [TaxId:1280]
Gene: lukG, ELQ85_15505, EP54_11070, EQ90_09460, HMPREF3211_02235, NCTC10654_02179, NCTC10702_03203, NCTC13131_01350, RK64_10675
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d6rhwg_ - Chain 'H':
Compound: Beta-channel forming cytolysin
Species: Staphylococcus aureus [TaxId:1280]
Gene: lukH, BTN44_11630, EP54_11065, EQ90_09455, HMPREF3211_02234, NCTC10654_02180, NCTC10702_03204, NCTC13131_01351, NCTC13196_01958, RK64_10680
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d6rhwh_ - Heterogens: DMS, MG, HOH
PDB Chain Sequences:
- Chain 'C':
Sequence, based on SEQRES records: (download)
>6rhwC (C:)
gcpqedsdiaflidgsgsiiphdfrrmkefvstvmeqlkksktlfslmqyseefrihftf
kefqnnpnprslvkpitqllgrthtatgirkvvrelfnitngarknafkilvvitdgekf
gdplgyedvipeadregviryvigvgdafrseksrqelntiaskpprdhvfqvnnfealk
tiqnqlrekifaieg
Sequence, based on observed residues (ATOM records): (download)
>6rhwC (C:)
dsdiaflidgsgsiiphdfrrmkefvstvmeqlkksktlfslmqyseefrihftfkefqn
npnprslvkpitqllgrthtatgirkvvrelfnitngarknafkilvvitdgekfgdplg
yedvipeadregviryvigvgdafrseksrqelntiaskpprdhvfqv
- Chain 'G':
Sequence, based on SEQRES records: (download)
>6rhwG (G:)
kinseikqvseknldgdtkmytrtattsdsqknitqslqfnfltepnydketvfikakgt
igsglrildpngywnstlrwpgsysvsiqnvddnnntnvtdfapknqdesrevkytygyk
tggdfsinrggltgnitkesnysetisyqqpsyrtlldqstshkgvgwkveahlinnmgh
dhtrqltndsdnrtkseifsltrngnlwakdnftpkdkmpvtvsegfnpeflavmshdkk
dkgksqfvvhykrsmdefkidwnrhgfwgywsgenhvdkkeeklsalyevdwkthnvkfv
kvlndnekk
Sequence, based on observed residues (ATOM records): (download)
>6rhwG (G:)
dtkmytrtattsdsqknitqslqfnfltepnydketvfikakgtigsglrildpngywns
tlrwpgsysvsiqnvddnnntnvtdfapknqdesrevkytygyktnitkesnysetisyq
qpsyrtlldqstshkgvgwkveahlinnmghdhtrqltndsdnrtkseifsltrngnlwa
kdnftpkdkmpvtvsegfnpeflavmshdkkdkgksqfvvhykrsmdefkidwnrhgyws
genhvdkkeeklsalyevdwkthnvkfvkvln
- Chain 'H':
Sequence, based on SEQRES records: (download)
>6rhwH (H:)
nsahkdsqdqnkkehvdksqqkdkrnvtnkdknstapddigkngkitkrtetvydektni
lqnlqfdfiddptydknvllvkkqgsihsnlkfeshkeeknsnwlkypseyhvdfqvkrn
rkteildqlpknkistakvdstfsyssggkfdstkgigrtssnsysktisynqqnydtia
sgknnnwhvhwsviandlkyggevknrndellfyrntriatvenpelsfaskyrypalvr
sgfnpefltylsneksnektqfevtytrnqdilknrpgihyappileknkdgqrlivtye
vdwknktvkvvdkysddnkpykeg
Sequence, based on observed residues (ATOM records): (download)
>6rhwH (H:)
kitkrtetvydektnilqnlqfdfiddptydknvllvkkqgsihsnlkfeshkeeknsnw
lkypseyhvdfqvkrnrkteildqlpknkistakvdstfsyssggkftssnsysktisyn
qqnydtiasgknnnwhvhwsviandlkyggevknrndellfyrntriatvenpelsfask
yrypalvrsgfnpefltylsneksnektqfevtytrnqdilknrpgiyappileknkdgq
rlivtyevdwknktvkvvdkysddnkpykeg