PDB entry 6rgl

View 6rgl on RCSB PDB site
Description: cryo-em structure of the anti-feeding prophage (afp) baseplate in contracted state
Deposited on 2019-04-16, released 2019-04-24
The last revision was dated 2019-11-06, with a file datestamp of 2019-11-01.
Experiment type: EM
Resolution: 5.4 Å
R-factor: N/A
AEROSPACI score: -0.02 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Afp2
    Species: Serratia entomophila [TaxId:42906]
    Gene: AFP2
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Afp2
    Species: Serratia entomophila [TaxId:42906]
    Gene: AFP2
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Afp3
    Species: Serratia entomophila [TaxId:42906]
    Gene: afp3
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Afp4
    Species: Serratia entomophila [TaxId:42906]
    Gene: afp4
    Database cross-references and differences (RAF-indexed):

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6rglA (A:)
mtvtttypgvylsedavssfsvnsaatavplfaydsentntinkpiqvfrnwaeftveyp
tpledafytslslwfmhgggkcylvneaniadavaqydditlivaagtdtttytafttvv
gqgyrifglfdgpkekiagtakpdevmeeyptspfgavfypwgtlasgaavppsaiaaas
itqtdrtrgvwkapanqavngvtpafavsddfqgkynqgkalnmirtfsgqgtvvwgart
ledsdnwryipvrrlfnaverdiqkslnklvfepnsqptwqrvkaavdsylhslwqqgal
agntpadawfvqvgkdltmtqeeinqgkmiikiglaavrpaefiilqfsqdiaq

    Sequence, based on observed residues (ATOM records):
    >6rglA (A:)
tttypgvylsedavssfsvnsaatavplfaydsentntinkpiqvfrnwaeftveyptpl
edafytslslwfmhgggkcylvneaniadavaqydditlivaagtdtttytafttvvgqg
yrifglfdgpkekiagtakpdevmeeyptspfgavfypwgtlasgaavppsaiaaasitq
tdrtrgvwkapanqavngvtpafavsddfqgkynqgkalnmirtfsgqgtvvwgartled
sdnwryipvrrlfnaverdiqkslnklvfepnsqptwqrvkaavdsylhslwqqgalagn
tpadawfvqvgkdltmtqeeinqgkmiikiglaavrpaefiilqfsqd

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6rglB (B:)
mtvtttypgvylsedavssfsvnsaatavplfaydsentntinkpiqvfrnwaeftveyp
tpledafytslslwfmhgggkcylvneaniadavaqydditlivaagtdtttytafttvv
gqgyrifglfdgpkekiagtakpdevmeeyptspfgavfypwgtlasgaavppsaiaaas
itqtdrtrgvwkapanqavngvtpafavsddfqgkynqgkalnmirtfsgqgtvvwgart
ledsdnwryipvrrlfnaverdiqkslnklvfepnsqptwqrvkaavdsylhslwqqgal
agntpadawfvqvgkdltmtqeeinqgkmiikiglaavrpaefiilqfsqdiaq

    Sequence, based on observed residues (ATOM records):
    >6rglB (B:)
tttypgvylsedavssfsvnsaatavplfaydsentntinkpiqvfrnwaeftveyptpl
edafytslslwfmhgggkcylvneaniadavaqydditlivaagtdtttytafttvvgqg
yrifglfdgpkekiagtakpdevmeeyptspfgavfypwgtlasgaavppsaiaaasitq
tdrtrgvwkapanqavngvtpafavsddfqgkynqgkalnmirtfsgqgtvvwgartled
sdnwryipvrrlfnaverdiqkslnklvfepnsqptwqrvkaavdsylhslwqqgalagn
tpadawfvqvgkdltmtqeeinqgkmiikiglaavrpaefiilqfsqd

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6rglC (C:)
matvtsvpgvyieedaspamsvsasatavplfvarftplkpelagvitrigswldytilf
dsnvpssarvtvsstavepspefdaletasskatttytyqiddtevvdptasvalrlyfq
ngggpcylyplekaddngplaalpdlidevgeitllaspdpdetyrtavygalaasldqh
kgyflladsvngdapsavggsaqvavyypnvevphtrklddaevaidgylddegkavttl
aalrvvntefageiaqslsgdlsaplslppsaliagvygktdgergvwkapanvvlngvs
dvsvrvtneqqaelnpkginvirhfsdrglvvwgsrtqkddddwryipvrrlfdaaerdi
kkalqpmvfepnsqltwkrvqtaidnylyrlwqqgalagnkaeeayfvrvgkgitmtqde
inqgkmiiqvgmaavrpaefiilkftqdmsq

    Sequence, based on observed residues (ATOM records):
    >6rglC (C:)
vtsvpgvyieedaspamsvsasatavplfvarftplkpelagvitrigswldytilfdsn
vpptasvalrlyfqngggpcylyplekaddngplaalpdlidevgeitllaspdpdetyr
tavygalaasldqhkgyflladsvngdapsavggsaqvavyypnvevphtaplslppsal
iagvygktdgergvwkapanvvlngvsdvsvrvtneqqaelnpkginvirhfsdrglvvw
gsrtqkddddwryipvrrlfdaaerdikkalqpmvfepnsqltwkrvqtaidnylyrlwq
qgalagnkaeeayfvrvgkgitmtqdeinqgkmiiqvgmaavrpaefiilkftqd

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6rglD (D:)
mtmvlpgvsynetlltqasnddpvtmplfigytppdtaipvtvmqpvsvgsltqanslfg
qrgtlayslrhffengglqcyvlplgpgkgepaarlqeliaalqtpqmletlladdktgl
vlvpelselnevsstslsaegvdaaevdadalwyqgwqvlltlcrqapqrfallelpedp
asavtltqqsfsadqcqrgaawwprletsyqdessapvvlsplpavaaaiqrsahdngvw
kapanialaktrrptqsiltsqalldnqgvscnlirsfvgkgvrlwgcrtllneentawr
yiqirllvssvehylsklaraylfepntaptwmklkgqvwtwlrqqwlagaffgtvedea
fslsigldetmteddirhgkmilqvrlallapaefiaisltldlrdgtasaqtggqs

    Sequence, based on observed residues (ATOM records):
    >6rglD (D:)
tmvlpgvsynetlltqasnddpvtmplfigytpppvtvmqpvsvgsltqanslfgqrgtl
ayslrhffengglqcyvlplgpgkgepaarlqeliaalqtpqmletlladdktglvlvpe
lselnevdadalwyqgwqvlltlcrqapqrfallelpedpasavtltqqsfsadqcqrga
awwprletsyqdessapvvlsplpavaaaiqrsahdngvwkapanialaktrrptqsilt
sqalldnqgvscnlirsfvgkgvrlwgcrtllneentawryiqirllvssvehylsklar
aylfepntaptwmklkgqvwtwlrqqwlagaffgtvedeafslsigldetmteddirhgk
milqvrlallapaefiaisltldlrd