PDB entry 6rdf

View 6rdf on RCSB PDB site
Description: cryoem structure of polytomella f-atp synthase, primary rotary state 3, monomer-masked refinement
Deposited on 2019-04-12, released 2019-07-03
The last revision was dated 2020-09-30, with a file datestamp of 2020-09-25.
Experiment type: EM
Resolution: 3.2 Å
R-factor: N/A
AEROSPACI score: 0.17 (click here for full SPACI score report)

Chains and heterogens:

  • Chain '0':
    Compound: ASA-10: Polytomella F-ATP synthase associated subunit 10
    Species: Polytomella sp. Pringsheim 198.80 [TaxId:37502]
    Database cross-references and differences (RAF-indexed):
    • PDB 6RDF (Start-81)
  • Chain '1':
    Compound: ATP synthase associated protein ASA1
    Species: Polytomella sp. Pringsheim 198.80 [TaxId:37502]
    Database cross-references and differences (RAF-indexed):
  • Chain '2':
    Compound: ASA-2: Polytomella F-ATP synthase associated subunit 2
    Species: Polytomella sp. Pringsheim 198.80 [TaxId:37502]
    Database cross-references and differences (RAF-indexed):
    • PDB 6RDF (0-440)
  • Chain '3':
    Compound: Mitochondrial F1F0 ATP synthase associated 32 kDa protein
    Species: Polytomella sp. Pringsheim 198.80 [TaxId:37502]
    Database cross-references and differences (RAF-indexed):
  • Chain '4':
    Compound: Mitochondrial ATP synthase associated protein ASA4
    Species: Polytomella sp. Pringsheim 198.80 [TaxId:37502]
    Database cross-references and differences (RAF-indexed):
  • Chain '5':
    Compound: Mitochondrial F1F0 ATP synthase associated 14 kDa protein
    Species: Polytomella sp. Pringsheim 198.80 [TaxId:37502]
    Database cross-references and differences (RAF-indexed):
  • Chain '6':
    Compound: Mitochondrial ATP synthase subunit ASA6
    Species: Polytomella sp. Pringsheim 198.80 [TaxId:37502]
    Database cross-references and differences (RAF-indexed):
  • Chain '7':
    Compound: Mitochondrial ATP synthase associated protein ASA7
    Species: Polytomella sp. Pringsheim 198.80 [TaxId:37502]
    Database cross-references and differences (RAF-indexed):
  • Chain '8':
    Compound: Mitochondrial ATP synthase subunit ASA8
    Species: Polytomella sp. Pringsheim 198.80 [TaxId:37502]
    Database cross-references and differences (RAF-indexed):
  • Chain '9':
    Compound: ASA-9: Polytomella F-ATP synthase associated subunit 9
    Species: Polytomella sp. Pringsheim 198.80 [TaxId:37502]
    Database cross-references and differences (RAF-indexed):
    • PDB 6RDF (0-96)
  • Chain 'M':
    Compound: Mitochondrial ATP synthase subunit 6
    Species: Polytomella sp. Pringsheim 198.80 [TaxId:37502]
    Database cross-references and differences (RAF-indexed):
  • Chain 'P':
    Compound: Mitochondrial ATP synthase subunit OSCP
    Species: Polytomella sp. Pringsheim 198.80 [TaxId:37502]
    Database cross-references and differences (RAF-indexed):
  • Chain 'T':
    Compound: ATP synthase subunit alpha
    Species: Polytomella sp. Pringsheim 198.80 [TaxId:37502]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: ZN, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain '0':
    Sequence, based on SEQRES records:
    >6rdf0 (0:)
msysayfakagfqfpaglsalvagivalnvctgrptkgtkeisnaeynatpigylqspdq
hptafpkvpgmkdvhgsphhhh

    Sequence, based on observed residues (ATOM records):
    >6rdf0 (0:)
sysayfakagfqfpaglsalvagivalnvctgrptkgtkeisnaeynatpigylqspdqh
ptafpkvpgmkdvhgsphhhh

  • Chain '1':
    Sequence, based on SEQRES records:
    >6rdf1 (1:)
mmraaqkakqelpatvltqtrsylaplrsdfteeitapkvasasnlvnewnnkkqatenl
mkllqaykdigdaksepllknhnprtfedrdypvpdfrtqnlkagdvpkffdtvistras
aaiaskdkfwagrkteaeaasakasaafprvavpewkkgktvsienlntvtdkyaaalvp
krklalpvlpegvkkavedfaasvgqaknasevsellakslaekavvteggkvvegfsyv
skavaakviatrraevherllklwakrllvspelaivplnefdaqlaskfegispkyqel
lsavaqgnktfaqrlnsspafssfllkrekaesevppseleleaaqkaaeledpevalrt
llgpqmealgasdlllseqirvitehrytpdrlqykegmkladkiaaqeaalkeelkviy
gdnvdvkhfqasprtpvqqlfdslknaaankeraakeaaaaaspylayavtkkqevqadp
snipfdevlypqlseellelelsdiredeialekaeeeelwlltltqqfkhiqkhfgidl
phsvvahmdpllikkidwettnaledfditlddmgaedakeqwgaenlshhflpliryrr
dlarkngdrygpdlvngn

    Sequence, based on observed residues (ATOM records):
    >6rdf1 (1:)
ylaplrsdfteeitapkvasasnlvnewnnkkqatenlmkllqaykdigdaksepllknh
nprtfedrdypvpdfrtqnlkagdvpkffdtvistrasaaiaskdkfwagrkteaeaasa
kasaafprvavpewkkgktvsienlntvtdkyaaalvpkrklalpvlpegvkkavedfaa
svgqaknasevsellakslaekavvteggkvvegfsyvskavaakviatrraevherllk
lwakrllvspelaivplnefdaqlaskfegispkyqellsavaqgnktfaqrlnsspafs
sfllkrekaesevppseleleaaqkaaeledpevalrtllgpqmealgasdlllseqirv
itehrytpdrlqykegmkladkiaaqeaalkeelkviygdnvdvkhfqasprtpvqqlfd
slknaaankeraakeaaaaaspylayavtkkqevqadpsnipfdevlypqlseellelel
sdiredeialekaeeeelwlltltqqfkhiqkhfgidlphsvvahmdpllikkidwettn
aledfditlddmgaedakeqwgaenlshhflpliryrrdlarkngdrygpdlvng

  • Chain '2':
    Sequence; same for both SEQRES and ATOM records:
    >6rdf2 (2:)
endvpailkeidslvsreavsakevsdaavaltylqvkanrrlwgkvlekagaaqdydaa
sltnllwaintggvehfktvaelagpavsllpslspvqlsivvealggagvknyelynka
savvvskigefkpaeiarvlygvafggvndvalakaagkvfastevdsrtaaqalyalak
lgradkatvdallksfkkgtesasdaaaasfalgslsfkaekaivdalkasagdlapaqa
veaayglalsgatdaeafkalfgvvapaiekapdalevsslaqlhvastisgaklpaavg
sfvakafglaadaarlkrssaesalvadvaaatavafgaqyrpevasavasyvktapdgs
vldiaitkgdakvlvqavpsslltsttpakplghvaayskvreaqgyavavvpanefeal
pdqkakaqyvlaaikkvapsf

  • Chain '3':
    Sequence, based on SEQRES records:
    >6rdf3 (3:)
mrqasrlalsirqagnveaasavpamtrqfsapgshehhetplskvmptvvsiprkvacl
algatkkvvcglassgpsqnlvstfankviveenlvnvaeidvpfwsywlssagftskda
fvkfaeavkpkvaalstsditnltvafkranyydkdlftgieanvsanftkfeteqllqi
vatfdafnhssvaflddvadsitycnhylapvragadelatlltyyakngheradllatv
argfsevslgklsaaqrkdtvlsalkafqtfgfypesieavigaalvspaeysaeelkev
eavkvaaenalggefvliqegahgh

    Sequence, based on observed residues (ATOM records):
    >6rdf3 (3:)
psqnlvstfankviveenlvnvaeidvpfwsywlssagftskdafvkfaeavkpkvaals
tsditnltvafkranyydkdlftgieanvsanftkfeteqllqivatfdafnhssvafld
dvadsitycnhylapvragadelatlltyyakngheradllatvargfsevslgklsaaq
rkdtvlsalkafqtfgfypesieavigaalvspaeysaeelkeveavkvaaenalggefv
liqeg

  • Chain '4':
    Sequence, based on SEQRES records:
    >6rdf4 (4:)
atepavskkevlyflsskdaesstavksylkslyagaqveatetdaseliaqlekkylsa
qvvepgvhnialplgesgsapvkryaaelfnlgaqagfecpfievskkfgqetatsetvk
dvlnktksyvsadynaalnevlssveaeingpvlfdgktegfkkfaakakavavsrglpa
dtilaycagsanedaadkvskefftwfesaytadaaaevkaieaeaasildrhlakpvaq
irkeqasayasllkraetakgakwaekyledvkavqwfdasvaeapasgpkvaa

    Sequence, based on observed residues (ATOM records):
    >6rdf4 (4:)
avskkevlyflsskdaesstavksylkslyagaqveatetdaseliaqlekkylsaqvve
pgvhnialplgesgsapvkryaaelfnlgaqagfecpfievskkfgqetatsetvkdvln
ktksyvsadynaalnevlssveaeingpvlfdgktegfkkfaakakavavsrglpadtil
aycagsanedaadkvskefftwfesaytadaaaevkaieaeaasildrhlakpvaqirke
qasayasllkraetakgakwaekyledvkavqwfdasvaeapasgpkvaa

  • Chain '5':
    Sequence; same for both SEQRES and ATOM records:
    >6rdf5 (5:)
mkllpeslqqeaataavvaswvlwhldtqllptimrehklhacwaaaakryneklfklnp
sydrvlslpavsknqvlenvfhtapkapvehlekmvsanskvydalnlqskrvliwqvkp
alf

  • Chain '6':
    Sequence, based on SEQRES records:
    >6rdf6 (6:)
mmlrtltrssavagqavrlfktsaaaaegnsvagiiksvnetsganllsslktikaqaap
iypaaasstgystqakialfgalswilyradgqskahewivdlnlnvlqaawlisfssli
pfravyfafrgmapatastlnglktfssisl

    Sequence, based on observed residues (ATOM records):
    >6rdf6 (6:)
egnsvagiiksvnetsganllsslktikaqaapiypaaasstgystqakialfgalswil
yradgqskahewivdlnlnvlqaawlisfsslipfravyfafrgmapatastlnglktfs
sisl

  • Chain '7':
    Sequence, based on SEQRES records:
    >6rdf7 (7:)
mssvragveagrrdlttftfsglqdapvaalsgsiklnvaakagkaevtvaagaakaatq
vsaaalrklsgskislaevarisvlhssiqnyllslsneryqllsqwpdfttmygkdfyy
rahpedlkkfydaadeyyklyetvtefdslsalasqvvpnyaarrrstvhpaigstvadg
aftnfllskq

    Sequence, based on observed residues (ATOM records):
    >6rdf7 (7:)
lttftfsglqdapvaalsgsiklnvaakagkaevtvaagaakaatqvsaaalrklsgski
slaevarisvlhssiqnyllslsneryqllsqwpdfttmygkdfyyrahpedlkkfydaa
deyyklyetvtefdslsalasqvvpnyaarrrstvhpaigstvadgaftnfllskq

  • Chain '8':
    Sequence, based on SEQRES records:
    >6rdf8 (8:)
mvlgevylkdilrtpptgaipanvphpfqtsfytyatkkliprhwyllggftftitlygi
ldglrdsgkkkaydeaihagktpytaggh

    Sequence, based on observed residues (ATOM records):
    >6rdf8 (8:)
vlgevylkdilrtpptgaipanvphpfqtsfytyatkkliprhwyllggftftitlygil
dglrdsgkkkaydeaihagktpytaggh

  • Chain '9':
    Sequence; same for both SEQRES and ATOM records:
    >6rdf9 (9:)
mavtsflgkafekyfydfsayeqfglnrflsskgqyvalrhvgfvmvgvnvllaanfpfn
ppfptigmcpagwegtwvcqadkakalemykewkksn

  • Chain 'M':
    Sequence, based on SEQRES records:
    >6rdfM (M:)
msvlssvsmgsrigssllgrssaylaqcgfstrsnlngsidtsssvfqalssdnenkpaa
splnvklpgmscssillpktsriavpfgnqtmamssvrdvktgslptnfltgvyrfwrsq
npaekphdpvndrllpavvdasdkrasigtwattffctiiscnllglmpfneaptsglgf
atglgvsvwatatilglsktgfkfpghfipggtpwpmafifvpletisytfravslgvrl
wvnmlaghtllhiltgmalalpfslgffsmvpatfgvccllsalvgleylvavlqsgvfs
ilstvyvgefnhdkfigpaakivkkih

    Sequence, based on observed residues (ATOM records):
    >6rdfM (M:)
ssvrdvktgslptnfltgvyrfwrsqnpaekphdpvndrllpavvdasdkrasigtwatt
ffctiiscnllglmpfneaptsglgfatglgvsvwatatilglsktgfkfpfifvpleti
sytfravslgvrlwvnmlaghtllhiltgmalalpfslgffsmvpatfgvccllsalvgl
eylvavlqsgvfsilstvyvgefnhdkfigpaakivk

  • Chain 'P':
    Sequence, based on SEQRES records:
    >6rdfP (P:)
mlarvasvalrraegkimpqmvralsvsaasaaqaelklptaplqlsgtsaqiatllwqv
aakenqldkvqdelyqfielfkqhselrrlatdpfvptlvrtkiissvlkdsgaseitkk
lfealadegalsallevtvnyeelmlahkkevyctvitaepldklerveltkkaekfvda
gfklvmqekidkkllggfviefsdrrvdmstakkveefnnfvnklvlsi

    Sequence, based on observed residues (ATOM records):
    >6rdfP (P:)
kevyctvitaepldklerveltkkaekfvdagfklvmqekidkkllggfviefsdrrvdm
stakkveefnnfvnklvlsi

  • Chain 'T':
    Sequence, based on SEQRES records:
    >6rdfT (T:)
mrspaafvarsglfkaslgqsnwaqkaeqmmasvtrtfaadakaldelrkpkfsskyliq
hvsqklipavkeweksyqppvihlgrvlsvgdgiarvyglksvqagelvcfdsgvkgmal
nlqadhvgvvvfgndsvihqgdlvyrtgqivnvpigpgtlgrvtdglgqpidgkgpltnv
rsslvevkapgiiarqsvreplftgvkavdalvpigrgqreliigdrqtgktavaidaii
hqkncneqvpkaqrvycvyvavgqkrstvaqlvklftqtgamrytimvsatasdaaplqf
lapysgcamaeyfrdtgkhgliiyddlskqsvayrqmslllrrppgreafpgdvfylhsr
lleraaklskelgggsltafpvietqagdvsayiatnvisitdgqifletelfykgirpa
lnvglsvsrvgsaaqfpgmkqvagtlklelaqyrevaafaqfgsdldaatqyvlergarl
temlkqkqfapipierqtvavyaatkgfldkvrvqdivaaeeavisqvnpavfkilkang
kitpaldahlkaelrkvklpga

    Sequence, based on observed residues (ATOM records):
    >6rdfT (T:)
adakaldelrkpkfsskyliqhvsqklipavkeweksyqp