PDB entry 6rd5

View 6rd5 on RCSB PDB site
Description: cryoem structure of polytomella f-atp synthase, focussed refinement of fo and peripheral stalk, c2 symmetry
Deposited on 2019-04-12, released 2019-07-03
The last revision was dated 2020-09-30, with a file datestamp of 2020-09-25.
Experiment type: EM
Resolution: 2.69 Å
R-factor: N/A
AEROSPACI score: 0.24 (click here for full SPACI score report)

Chains and heterogens:

  • Chain '0':
    Compound: ASA-10: Polytomella F-ATP synthase associated subunit 10
    Species: Polytomella sp. Pringsheim 198.80 [TaxId:37502]
    Database cross-references and differences (RAF-indexed):
    • PDB 6RD5
  • Chain '1':
    Compound: ATP synthase associated protein ASA1
    Species: Polytomella sp. Pringsheim 198.80 [TaxId:37502]
    Database cross-references and differences (RAF-indexed):
  • Chain '3':
    Compound: Mitochondrial F1F0 ATP synthase associated 32 kDa protein
    Species: Polytomella sp. Pringsheim 198.80 [TaxId:37502]
    Database cross-references and differences (RAF-indexed):
  • Chain '5':
    Compound: Mitochondrial F1F0 ATP synthase associated 14 kDa protein
    Species: Polytomella sp. Pringsheim 198.80 [TaxId:37502]
    Database cross-references and differences (RAF-indexed):
  • Chain '6':
    Compound: Mitochondrial ATP synthase subunit ASA6
    Species: Polytomella sp. Pringsheim 198.80 [TaxId:37502]
    Database cross-references and differences (RAF-indexed):
  • Chain '8':
    Compound: Mitochondrial ATP synthase subunit ASA8
    Species: Polytomella sp. Pringsheim 198.80 [TaxId:37502]
    Database cross-references and differences (RAF-indexed):
  • Chain '9':
    Compound: Mitochondrial ATP synthase subunit ASA9
    Species: Polytomella sp. Pringsheim 198.80 [TaxId:37502]
    Database cross-references and differences (RAF-indexed):
    • PDB 6RD5 (Start-96)
  • Chain 'M':
    Compound: Mitochondrial ATP synthase subunit 6
    Species: Polytomella sp. Pringsheim 198.80 [TaxId:37502]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: PEV, LMT, ZN, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain '0':
    Sequence, based on SEQRES records:
    >6rd50 (0:)
    msysayfakagfqfpaglsalvagivalnvctgrptkgtkeisnaeynatpigylqspdq
    hptafpkvpgmkdvhgsphhhh
    

    Sequence, based on observed residues (ATOM records):
    >6rd50 (0:)
    sysayfakagfqfpaglsalvagivalnvctgrptkgtkeisnaeynatpigylqspdqh
    ptafpkvpgmkdvhgsphh
    

  • Chain '1':
    Sequence, based on SEQRES records:
    >6rd51 (1:)
    mmraaqkakqelpatvltqtrsylaplrsdfteeitapkvasasnlvnewnnkkqatenl
    mkllqaykdigdaksepllknhnprtfedrdypvpdfrtqnlkagdvpkffdtvistras
    aaiaskdkfwagrkteaeaasakasaafprvavpewkkgktvsienlntvtdkyaaalvp
    krklalpvlpegvkkavedfaasvgqaknasevsellakslaekavvteggkvvegfsyv
    skavaakviatrraevherllklwakrllvspelaivplnefdaqlaskfegispkyqel
    lsavaqgnktfaqrlnsspafssfllkrekaesevppseleleaaqkaaeledpevalrt
    llgpqmealgasdlllseqirvitehrytpdrlqykegmkladkiaaqeaalkeelkviy
    gdnvdvkhfqasprtpvqqlfdslknaaankeraakeaaaaaspylayavtkkqevqadp
    snipfdevlypqlseellelelsdiredeialekaeeeelwlltltqqfkhiqkhfgidl
    phsvvahmdpllikkidwettnaledfditlddmgaedakeqwgaenlshhflpliryrr
    dlarkngdrygpdlvngn
    

    Sequence, based on observed residues (ATOM records):
    >6rd51 (1:)
    ylaplrsdfteeitapkvasasnlvnewnnkkqatenlmkllqaykdigdaksepllknh
    nprtfedrdypvpdfrtqnlkagdvpkffdtvistrasaaiaskdkfwagrkteaeaasa
    kasaafprvavpewkkgktvsienlntvtdkyaaalvpkrklalpvlpegvkkavedfaa
    svgqaknasevsellakslaekavvteggkvvegfsyvskavaakviatrraevherllk
    lwakrllvspelaivplnefdaqlaskfegispkyqellsavaqgnktfaqrlnsspafs
    sfllkrekaesevppseleleaaqkaaeledpevalrtllgpqmealgasdlllseqirv
    itehrytpdrlqykegmkladkiaaqeaalkeelkviygdnvdvkhfqasprtpvqqlfd
    slknaaankeraakeaaaaaspylayavtkkqevqadpsnipfdevlypqlseellelel
    sdiredeialekaeeeelwlltltqqfkhiqkhfgidlphsvvahmdpllikkidwettn
    aledfditlddmgaedakeqwgaenlshhflpliryrrdlarkngdrygpdlvng
    

  • Chain '3':
    Sequence, based on SEQRES records:
    >6rd53 (3:)
    mrqasrlalsirqagnveaasavpamtrqfsapgshehhetplskvmptvvsiprkvacl
    algatkkvvcglassgpsqnlvstfankviveenlvnvaeidvpfwsywlssagftskda
    fvkfaeavkpkvaalstsditnltvafkranyydkdlftgieanvsanftkfeteqllqi
    vatfdafnhssvaflddvadsitycnhylapvragadelatlltyyakngheradllatv
    argfsevslgklsaaqrkdtvlsalkafqtfgfypesieavigaalvspaeysaeelkev
    eavkvaaenalggefvliqegahgh
    

    Sequence, based on observed residues (ATOM records):
    >6rd53 (3:)
    sqnlvstfankviveenlvnvaeidvpfwsywlssagftskdafvkfaeavkpkvaalst
    sditnltvafkranyydkdlftgieanvsanftkfeteqllqivatfdafnhssvafldd
    vadsitycnhylapvragadelatlltyyakngheradllatvargfsevslgklsaaqr
    kdtvlsalkafqtfgfypesieavigaalvspaeysaeelkeveavkvaaenalggefvl
    iqeg
    

  • Chain '5':
    Sequence; same for both SEQRES and ATOM records:
    >6rd55 (5:)
    mkllpeslqqeaataavvaswvlwhldtqllptimrehklhacwaaaakryneklfklnp
    sydrvlslpavsknqvlenvfhtapkapvehlekmvsanskvydalnlqskrvliwqvkp
    alf
    

  • Chain '6':
    Sequence, based on SEQRES records:
    >6rd56 (6:)
    mmlrtltrssavagqavrlfktsaaaaegnsvagiiksvnetsganllsslktikaqaap
    iypaaasstgystqakialfgalswilyradgqskahewivdlnlnvlqaawlisfssli
    pfravyfafrgmapatastlnglktfssisl
    

    Sequence, based on observed residues (ATOM records):
    >6rd56 (6:)
    egnsvagiiksvnetsganllsslktikaqaapiypaaasstgystqakialfgalswil
    yradgqskahewivdlnlnvlqaawlisfsslipfravyfafrgmapatastlnglktfs
    sisl
    

  • Chain '8':
    Sequence, based on SEQRES records:
    >6rd58 (8:)
    mvlgevylkdilrtpptgaipanvphpfqtsfytyatkkliprhwyllggftftitlygi
    ldglrdsgkkkaydeaihagktpytaggh
    

    Sequence, based on observed residues (ATOM records):
    >6rd58 (8:)
    vlgevylkdilrtpptgaipanvphpfqtsfytyatkkliprhwyllggftftitlygil
    dglrdsgkkkaydeaihagktpytaggh
    

  • Chain '9':
    Sequence, based on SEQRES records:
    >6rd59 (9:)
    mavtsflgkafekyfydfsayeqfglnrflsskgqyvalrhvgfvmvgvnvllaanfpfn
    ppfptigmcpagwegtwvcqadkakalemykewkksn
    

    Sequence, based on observed residues (ATOM records):
    >6rd59 (9:)
    avtsflgkafekyfydfsayeqfglnrflsskgqyvalrhvgfvmvgvnvllaanfpfnp
    pfptigmcpagwegtwvcqadkakalemykewkksn
    

  • Chain 'M':
    Sequence, based on SEQRES records:
    >6rd5M (M:)
    msvlssvsmgsrigssllgrssaylaqcgfstrsnlngsidtsssvfqalssdnenkpaa
    splnvklpgmscssillpktsriavpfgnqtmamssvrdvktgslptnfltgvyrfwrsq
    npaekphdpvndrllpavvdasdkrasigtwattffctiiscnllglmpfneaptsglgf
    atglgvsvwatatilglsktgfkfpghfipggtpwpmafifvpletisytfravslgvrl
    wvnmlaghtllhiltgmalalpfslgffsmvpatfgvccllsalvgleylvavlqsgvfs
    ilstvyvgefnhdkfigpaakivkkih
    

    Sequence, based on observed residues (ATOM records):
    >6rd5M (M:)
    ssvrdvktgslptnfltgvyrfwrsqnpaekphdpvndrllpavvdasdkrasigtwatt
    ffctiiscnllglmpfneaptsglgfatglgvsvwatatilglsktgfkfpfifvpleti
    sytfravslgvrlwvnmlaghtllhiltgmalalpfslgffsmvpatfgvccllsalvgl
    eylvavlqsgvfsilstvyvgefnhdkfigpaakivk