PDB entry 6rd1

View 6rd1 on RCSB PDB site
Description: Ruminococcus gnavus sialic acid aldolase catalytic lysine mutant in complex with sialic acid
Class: lyase
Keywords: Neu5Ac, sialic acid, aldolase, LYASE, ruminococcus gnavus
Deposited on 2019-04-12, released 2019-09-25
The last revision prior to the SCOPe 2.08 freeze date was dated 2019-12-04, with a file datestamp of 2019-11-29.
Experiment type: XRAY
Resolution: 1.89 Å
R-factor: N/A
AEROSPACI score: 0.34 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Putative N-acetylneuraminate lyase
    Species: [Ruminococcus] gnavus ATCC 29149 [TaxId:411470]
    Gene: RUMGNA_02692
    Database cross-references and differences (RAF-indexed):
    • Uniprot A7B555 (Start-335)
      • conflict (197)
    Domains in SCOPe 2.08: d6rd1a_
  • Chain 'B':
    Compound: Putative N-acetylneuraminate lyase
    Species: [Ruminococcus] gnavus ATCC 29149 [TaxId:411470]
    Gene: RUMGNA_02692
    Database cross-references and differences (RAF-indexed):
    • Uniprot A7B555 (Start-335)
      • conflict (197)
    Domains in SCOPe 2.08: d6rd1b_
  • Heterogens: SI3, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6rd1A (A:)
msyyhhhhhhdydipttenlyfqgamadigsmrnlekykgvipafyacydkegnispegv
qgltkyfvkkgvkgvyvngssgeciyqsvedrkivlenvmkvaegkltviahvacnntkd
sqelarhaeglgvdaiaaippiyfhlpeyaiaqywnaisaaapntdfviynipqlagval
tqnlfvemrknpnvigvanssmpvqdiqmfkqaagaeyiifngpdeqfmsgrvigaegai
ggtygampelylkldecinagkmtearkiqyacneiiykmcsahgnmyavikailkineg
lelgavreplpalvdedmeivkeaaqmicdakkkfl

    Sequence, based on observed residues (ATOM records): (download) 
    >6rd1A (A:)
rnlekykgvipafyacydkegnispegvqgltkyfvkkgvkgvyvngssgeciyqsvedr
kivlenvmkvaegkltviahvacnntkdsqelarhaeglgvdaiaaippiyfhlpeyaia
qywnaisaaapntdfviynipqlagvaltqnlfvemrknpnvigvanssmpvqdiqmfkq
aagaeyiifngpdeqfmsgrvigaegaiggtygampelylkldecinagkmtearkiqya
cneiiykmcsahgnmyavikailkineglelgavreplpalvdedmeivkeaaqmicdak
kkfl

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6rd1B (B:)
msyyhhhhhhdydipttenlyfqgamadigsmrnlekykgvipafyacydkegnispegv
qgltkyfvkkgvkgvyvngssgeciyqsvedrkivlenvmkvaegkltviahvacnntkd
sqelarhaeglgvdaiaaippiyfhlpeyaiaqywnaisaaapntdfviynipqlagval
tqnlfvemrknpnvigvanssmpvqdiqmfkqaagaeyiifngpdeqfmsgrvigaegai
ggtygampelylkldecinagkmtearkiqyacneiiykmcsahgnmyavikailkineg
lelgavreplpalvdedmeivkeaaqmicdakkkfl

    Sequence, based on observed residues (ATOM records): (download) 
    >6rd1B (B:)
rnlekykgvipafyacydkegnispegvqgltkyfvkkgvkgvyvngssgeciyqsvedr
kivlenvmkvaegkltviahvacnntkdsqelarhaeglgvdaiaaippiyfhlpeyaia
qywnaisaaapntdfviynipqlagvaltqnlfvemrknpnvigvanssmpvqdiqmfkq
aagaeyiifngpdeqfmsgrvigaegaiggtygampelylkldecinagkmtearkiqya
cneiiykmcsahgnmyavikailkineglelgavreplpalvdedmeivkeaaqmicdak
kkfl