PDB entry 6rbn

View 6rbn on RCSB PDB site
Description: cryo-em structure of the anti-feeding prophage (afp) helical sheath- tube complex in extended state
Deposited on 2019-04-11, released 2019-04-24
The last revision was dated 2019-11-06, with a file datestamp of 2019-11-01.
Experiment type: EM
Resolution: 2.8 Å
R-factor: N/A
AEROSPACI score: 0.17 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Afp1
    Species: Serratia entomophila [TaxId:42906]
    Gene: afp1
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Afp1
    Species: Serratia entomophila [TaxId:42906]
    Gene: afp1
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Afp2
    Species: Serratia entomophila [TaxId:42906]
    Gene: AFP2
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Afp3
    Species: Serratia entomophila [TaxId:42906]
    Gene: afp3
    Database cross-references and differences (RAF-indexed):

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6rbnA (A:)
maitaddiavqypiptyrfivtlgdeqvpftsasgldinfdtieyrdgtgnwfkmpgqrq
apnitlskgvfpgknamyewinaiqlnqvekkdimisltneagtevlvswnvsnafptsl
tspsfdatsneiavqqitlmadrvtiqta

    Sequence, based on observed residues (ATOM records):
    >6rbnA (A:)
aitaddiavqypiptyrfivtlgdeqvpftsasgldinfdtieyrdgtgnwfkmpgqrqa
pnitlskgvfpgknamyewinaiqlnqvekkdimisltneagtevlvswnvsnafptslt
spsfdatsneiavqqitlmadrvtiqta

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6rbnB (B:)
maitaddiavqypiptyrfivtlgdeqvpftsasgldinfdtieyrdgtgnwfkmpgqrq
apnitlskgvfpgknamyewinaiqlnqvekkdimisltneagtevlvswnvsnafptsl
tspsfdatsneiavqqitlmadrvtiqta

    Sequence, based on observed residues (ATOM records):
    >6rbnB (B:)
aitaddiavqypiptyrfivtlgdeqvpftsasgldinfdtieyrdgtgnwfkmpgqrqa
pnitlskgvfpgknamyewinaiqlnqvekkdimisltneagtevlvswnvsnafptslt
spsfdatsneiavqqitlmadrvtiqta

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6rbnC (C:)
mtvtttypgvylsedavssfsvnsaatavplfaydsentntinkpiqvfrnwaeftveyp
tpledafytslslwfmhgggkcylvneaniadavaqydditlivaagtdtttytafttvv
gqgyrifglfdgpkekiagtakpdevmeeyptspfgavfypwgtlasgaavppsaiaaas
itqtdrtrgvwkapanqavngvtpafavsddfqgkynqgkalnmirtfsgqgtvvwgart
ledsdnwryipvrrlfnaverdiqkslnklvfepnsqptwqrvkaavdsylhslwqqgal
agntpadawfvqvgkdltmtqeeinqgkmiikiglaavrpaefiilqfsqdiaq

    Sequence, based on observed residues (ATOM records):
    >6rbnC (C:)
vtttypgvylsedavssfsvnsaatavplfaydsentntinkpiqvfrnwaeftveyptp
ledafytslslwfmhgggkcylvneaniadavaqydditlivaagtdtttytafttvvgq
gyrifglfdgpkekiagtakpdevmeeyptspfgavfypwgtlasgaavppsaiaaasit
qtdrtrgvwkapanqavngvtpafavsddfqgkynqgkalnmirtfsgqgtvvwgartle
dsdnwryipvrrlfnaverdiqkslnklvfepnsqptwqrvkaavdsylhslwqqgalag
ntpadawfvqvgkdltmtqeeinqgkmiikiglaavrpaefiilqfsqdi

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6rbnD (D:)
matvtsvpgvyieedaspamsvsasatavplfvarftplkpelagvitrigswldytilf
dsnvpssarvtvsstavepspefdaletasskatttytyqiddtevvdptasvalrlyfq
ngggpcylyplekaddngplaalpdlidevgeitllaspdpdetyrtavygalaasldqh
kgyflladsvngdapsavggsaqvavyypnvevphtrklddaevaidgylddegkavttl
aalrvvntefageiaqslsgdlsaplslppsaliagvygktdgergvwkapanvvlngvs
dvsvrvtneqqaelnpkginvirhfsdrglvvwgsrtqkddddwryipvrrlfdaaerdi
kkalqpmvfepnsqltwkrvqtaidnylyrlwqqgalagnkaeeayfvrvgkgitmtqde
inqgkmiiqvgmaavrpaefiilkftqdmsq

    Sequence, based on observed residues (ATOM records):
    >6rbnD (D:)
vtsvpgvyieedaspamsvsasatavplfvarftplkpelagvitrigswldytilfdsn
vpssvvdptasvalrlyfqngggpcylyplekaddngplaalpdlidevgeitllaspdp
detyrtavygalaasldqhkgyflladsvngdapsavggsaqvavyypnvevpplslpps
aliagvygktdgergvwkapanvvlngvsdvsvrvtneqqaelnpkginvirhfsdrglv
vwgsrtqkddddwryipvrrlfdaaerdikkalqpmvfepnsqltwkrvqtaidnylyrl
wqqgalagnkaeeayfvrvgkgitmtqdeinqgkmiiqvgmaavrpaefiilkftqdm