PDB entry 6rb7

View 6rb7 on RCSB PDB site
Description: Ruminococcus gnavus sialic acid aldolase catalytic lysine mutant
Class: lyase
Keywords: Neu5Ac, sialic acid, aldolase, LYASE, ruminococcus gnavus
Deposited on 2019-04-09, released 2019-09-25
The last revision prior to the SCOPe 2.08 freeze date was dated 2019-12-04, with a file datestamp of 2019-11-29.
Experiment type: XRAY
Resolution: 1.6 Å
R-factor: N/A
AEROSPACI score: 0.44 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Putative N-acetylneuraminate lyase
    Species: [Ruminococcus] gnavus ATCC 29149 [TaxId:411470]
    Gene: RUMGNA_02692
    Database cross-references and differences (RAF-indexed):
    • Uniprot A7B555 (31-335)
      • conflict (197)
    Domains in SCOPe 2.08: d6rb7a_
  • Chain 'B':
    Compound: Putative N-acetylneuraminate lyase
    Species: [Ruminococcus] gnavus ATCC 29149 [TaxId:411470]
    Gene: RUMGNA_02692
    Database cross-references and differences (RAF-indexed):
    • Uniprot A7B555 (31-335)
      • conflict (197)
    Domains in SCOPe 2.08: d6rb7b_
  • Chain 'E':
    Compound: Putative N-acetylneuraminate lyase
    Species: [Ruminococcus] gnavus ATCC 29149 [TaxId:411470]
    Gene: RUMGNA_02692
    Database cross-references and differences (RAF-indexed):
    • Uniprot A7B555 (31-335)
      • conflict (197)
    Domains in SCOPe 2.08: d6rb7e_
  • Chain 'F':
    Compound: Putative N-acetylneuraminate lyase
    Species: [Ruminococcus] gnavus ATCC 29149 [TaxId:411470]
    Gene: RUMGNA_02692
    Database cross-references and differences (RAF-indexed):
    • Uniprot A7B555 (31-335)
      • conflict (197)
    Domains in SCOPe 2.08: d6rb7f_
  • Heterogens: TRS, GOL, PEG, BCN, MG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6rb7A (A:)
msyyhhhhhhdydipttenlyfqgamadigsmrnlekykgvipafyacydkegnispegv
qgltkyfvkkgvkgvyvngssgeciyqsvedrkivlenvmkvaegkltviahvacnntkd
sqelarhaeglgvdaiaaippiyfhlpeyaiaqywnaisaaapntdfviynipqlagval
tqnlfvemrknpnvigvanssmpvqdiqmfkqaagaeyiifngpdeqfmsgrvigaegai
ggtygampelylkldecinagkmtearkiqyacneiiykmcsahgnmyavikailkineg
lelgavreplpalvdedmeivkeaaqmicdakkkfl

    Sequence, based on observed residues (ATOM records): (download) 
    >6rb7A (A:)
mrnlekykgvipafyacydkegnispegvqgltkyfvkkgvkgvyvngssgeciyqsved
rkivlenvmkvaegkltviahvacnntkdsqelarhaeglgvdaiaaippiyfhlpeyai
aqywnaisaaapntdfviynipqlagvaltqnlfvemrknpnvigvanssmpvqdiqmfk
qaagaeyiifngpdeqfmsgrvigaegaiggtygampelylkldecinagkmtearkiqy
acneiiykmcsahgnmyavikailkineglelgavreplpalvdedmeivkeaaqmicda
kkkfl

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6rb7B (B:)
msyyhhhhhhdydipttenlyfqgamadigsmrnlekykgvipafyacydkegnispegv
qgltkyfvkkgvkgvyvngssgeciyqsvedrkivlenvmkvaegkltviahvacnntkd
sqelarhaeglgvdaiaaippiyfhlpeyaiaqywnaisaaapntdfviynipqlagval
tqnlfvemrknpnvigvanssmpvqdiqmfkqaagaeyiifngpdeqfmsgrvigaegai
ggtygampelylkldecinagkmtearkiqyacneiiykmcsahgnmyavikailkineg
lelgavreplpalvdedmeivkeaaqmicdakkkfl

    Sequence, based on observed residues (ATOM records): (download) 
    >6rb7B (B:)
mrnlekykgvipafyacydkegnispegvqgltkyfvkkgvkgvyvngssgeciyqsved
rkivlenvmkvaegkltviahvacnntkdsqelarhaeglgvdaiaaippiyfhlpeyai
aqywnaisaaapntdfviynipqlagvaltqnlfvemrknpnvigvanssmpvqdiqmfk
qaagaeyiifngpdeqfmsgrvigaegaiggtygampelylkldecinagkmtearkiqy
acneiiykmcsahgnmyavikailkineglelgavreplpalvdedmeivkeaaqmicda
kkkfl

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >6rb7E (E:)
msyyhhhhhhdydipttenlyfqgamadigsmrnlekykgvipafyacydkegnispegv
qgltkyfvkkgvkgvyvngssgeciyqsvedrkivlenvmkvaegkltviahvacnntkd
sqelarhaeglgvdaiaaippiyfhlpeyaiaqywnaisaaapntdfviynipqlagval
tqnlfvemrknpnvigvanssmpvqdiqmfkqaagaeyiifngpdeqfmsgrvigaegai
ggtygampelylkldecinagkmtearkiqyacneiiykmcsahgnmyavikailkineg
lelgavreplpalvdedmeivkeaaqmicdakkkfl

    Sequence, based on observed residues (ATOM records): (download) 
    >6rb7E (E:)
mrnlekykgvipafyacydkegnispegvqgltkyfvkkgvkgvyvngssgeciyqsved
rkivlenvmkvaegkltviahvacnntkdsqelarhaeglgvdaiaaippiyfhlpeyai
aqywnaisaaapntdfviynipqlagvaltqnlfvemrknpnvigvanssmpvqdiqmfk
qaagaeyiifngpdeqfmsgrvigaegaiggtygampelylkldecinagkmtearkiqy
acneiiykmcsahgnmyavikailkineglelgavreplpalvdedmeivkeaaqmicda
kkkfl

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >6rb7F (F:)
msyyhhhhhhdydipttenlyfqgamadigsmrnlekykgvipafyacydkegnispegv
qgltkyfvkkgvkgvyvngssgeciyqsvedrkivlenvmkvaegkltviahvacnntkd
sqelarhaeglgvdaiaaippiyfhlpeyaiaqywnaisaaapntdfviynipqlagval
tqnlfvemrknpnvigvanssmpvqdiqmfkqaagaeyiifngpdeqfmsgrvigaegai
ggtygampelylkldecinagkmtearkiqyacneiiykmcsahgnmyavikailkineg
lelgavreplpalvdedmeivkeaaqmicdakkkfl

    Sequence, based on observed residues (ATOM records): (download) 
    >6rb7F (F:)
mrnlekykgvipafyacydkegnispegvqgltkyfvkkgvkgvyvngssgeciyqsved
rkivlenvmkvaegkltviahvacnntkdsqelarhaeglgvdaiaaippiyfhlpeyai
aqywnaisaaapntdfviynipqlagvaltqnlfvemrknpnvigvanssmpvqdiqmfk
qaagaeyiifngpdeqfmsgrvigaegaiggtygampelylkldecinagkmtearkiqy
acneiiykmcsahgnmyavikailkineglelgavreplpalvdedmeivkeaaqmicda
kkkfl