PDB entry 6rao

View 6rao on RCSB PDB site
Description: cryo-em structure of the anti-feeding prophage (afp) baseplate, 6-fold symmetrised
Deposited on 2019-04-06, released 2019-04-17
The last revision was dated 2019-11-06, with a file datestamp of 2019-11-01.
Experiment type: EM
Resolution: 3.1 Å
R-factor: N/A
AEROSPACI score: 0.13 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Afp1
    Species: Serratia entomophila [TaxId:42906]
    Gene: afp1
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Afp1
    Species: Serratia entomophila [TaxId:42906]
    Gene: afp1
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Afp2
    Species: Serratia entomophila [TaxId:42906]
    Gene: AFP2
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Afp3
    Species: Serratia entomophila [TaxId:42906]
    Gene: afp3
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: Afp4
    Species: Serratia entomophila [TaxId:42906]
    Gene: afp4
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: Afp5
    Species: Serratia entomophila [TaxId:42906]
    Gene: afp5
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: Afp7
    Species: Serratia entomophila [TaxId:42906]
    Gene: afp7
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: Afp9
    Species: Serratia entomophila [TaxId:42906]
    Gene: afp9
    Database cross-references and differences (RAF-indexed):
  • Chain 'I':
    Compound: Afp11
    Species: Serratia entomophila [TaxId:42906]
    Gene: afp11
    Database cross-references and differences (RAF-indexed):
  • Chain 'J':
    Compound: Afp12
    Species: Serratia entomophila [TaxId:42906]
    Gene: afp12
    Database cross-references and differences (RAF-indexed):

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6raoA (A:)
    maitaddiavqypiptyrfivtlgdeqvpftsasgldinfdtieyrdgtgnwfkmpgqrq
    apnitlskgvfpgknamyewinaiqlnqvekkdimisltneagtevlvswnvsnafptsl
    tspsfdatsneiavqqitlmadrvtiqta
    

    Sequence, based on observed residues (ATOM records):
    >6raoA (A:)
    aitaddiavqypiptyrfivtlgdeqvpftsasgldinfdtieyrdgtgnwfkmpgqrqa
    pnitlskgvfpgknamyewinaiqlnqvekkdimisltneagtevlvswnvsnafptslt
    spsfdatsneiavqqitlmadrvtiqta
    

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6raoB (B:)
    maitaddiavqypiptyrfivtlgdeqvpftsasgldinfdtieyrdgtgnwfkmpgqrq
    apnitlskgvfpgknamyewinaiqlnqvekkdimisltneagtevlvswnvsnafptsl
    tspsfdatsneiavqqitlmadrvtiqta
    

    Sequence, based on observed residues (ATOM records):
    >6raoB (B:)
    aitaddiavqypiptyrfivtlgdeqvpftsasgldinfdtieyrdgtgnwfkmpgqrqa
    pnitlskgvfpgknamyewinaiqlnqvekkdimisltneagtevlvswnvsnafptslt
    spsfdatsneiavqqitlmadrvtiqta
    

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6raoC (C:)
    mtvtttypgvylsedavssfsvnsaatavplfaydsentntinkpiqvfrnwaeftveyp
    tpledafytslslwfmhgggkcylvneaniadavaqydditlivaagtdtttytafttvv
    gqgyrifglfdgpkekiagtakpdevmeeyptspfgavfypwgtlasgaavppsaiaaas
    itqtdrtrgvwkapanqavngvtpafavsddfqgkynqgkalnmirtfsgqgtvvwgart
    ledsdnwryipvrrlfnaverdiqkslnklvfepnsqptwqrvkaavdsylhslwqqgal
    agntpadawfvqvgkdltmtqeeinqgkmiikiglaavrpaefiilqfsqdiaq
    

    Sequence, based on observed residues (ATOM records):
    >6raoC (C:)
    tttypgvylsedavssfsvnsaatavplfaydsentntinkpiqvfrnwaeftveyptpl
    edafytslslwfmhgggkcylvneaniadavaqydditlivaagtdtttytafttvvgqg
    yrifglfdgpkekiagtakpdevmeeyptspfgavfypwgtlasgaavppsaiaaasitq
    tdrtrgvwkapanqavngvtpafavsddfqgkynqgkalnmirtfsgqgtvvwgartled
    sdnwryipvrrlfnaverdiqkslnklvfepnsqptwqrvkaavdsylhslwqqgalagn
    tpadawfvqvgkdltmtqeeinqgkmiikiglaavrpaefiilqfsqdiaq
    

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6raoD (D:)
    matvtsvpgvyieedaspamsvsasatavplfvarftplkpelagvitrigswldytilf
    dsnvpssarvtvsstavepspefdaletasskatttytyqiddtevvdptasvalrlyfq
    ngggpcylyplekaddngplaalpdlidevgeitllaspdpdetyrtavygalaasldqh
    kgyflladsvngdapsavggsaqvavyypnvevphtrklddaevaidgylddegkavttl
    aalrvvntefageiaqslsgdlsaplslppsaliagvygktdgergvwkapanvvlngvs
    dvsvrvtneqqaelnpkginvirhfsdrglvvwgsrtqkddddwryipvrrlfdaaerdi
    kkalqpmvfepnsqltwkrvqtaidnylyrlwqqgalagnkaeeayfvrvgkgitmtqde
    inqgkmiiqvgmaavrpaefiilkftqdmsq
    

    Sequence, based on observed residues (ATOM records):
    >6raoD (D:)
    vtsvpgvyieedaspamsvsasatavplfvarftplkpelagvitrigswldytilfdsn
    vpssvvdptasvalrlyfqngggpcylyplekaddngplaalpdlidevgeitllaspdp
    detyrtavygalaasldqhkgyflladsvngdapsavggsaqvavyypnvevpplslpps
    aliagvygktdgergvwkapanvvlngvsdvsvrvtneqqaelnpkginvirhfsdrglv
    vwgsrtqkddddwryipvrrlfdaaerdikkalqpmvfepnsqltwkrvqtaidnylyrl
    wqqgalagnkaeeayfvrvgkgitmtqdeinqgkmiiqvgmaavrpaefiilkftqdm
    

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6raoE (E:)
    mtmvlpgvsynetlltqasnddpvtmplfigytppdtaipvtvmqpvsvgsltqanslfg
    qrgtlayslrhffengglqcyvlplgpgkgepaarlqeliaalqtpqmletlladdktgl
    vlvpelselnevsstslsaegvdaaevdadalwyqgwqvlltlcrqapqrfallelpedp
    asavtltqqsfsadqcqrgaawwprletsyqdessapvvlsplpavaaaiqrsahdngvw
    kapanialaktrrptqsiltsqalldnqgvscnlirsfvgkgvrlwgcrtllneentawr
    yiqirllvssvehylsklaraylfepntaptwmklkgqvwtwlrqqwlagaffgtvedea
    fslsigldetmteddirhgkmilqvrlallapaefiaisltldlrdgtasaqtggqs
    

    Sequence, based on observed residues (ATOM records):
    >6raoE (E:)
    tmvlpgvsynetlltqasnddpvtmplfigytpppvtvmqpvsvgsltqanslfgqrgtl
    ayslrhffengglqcyvlplgpgkgepaarlqeliaalqtpqmletlladdktglvlvpe
    lselnevdadalwyqgwqvlltlcrqapqrfallelpedpasavtltqqsfsadqcqrga
    awwprletsyqdessapvvlsplpavaaaiqrsahdngvwkapanialaktrrptqsilt
    sqalldnqgvscnlirsfvgkgvrlwgcrtllneentawryiqirllvssvehylsklar
    aylfepntaptwmklkgqvwtwlrqqwlagaffgtvedeafslsigldetmteddirhgk
    milqvrlallapaefiaisltldlrd
    

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records:
    >6raoF (F:)
    mstpavshrflvnflfnnipnpfdiafqrisglsrtlevsqhreggenvrnlwlaeqvnh
    gslvlergvmnaspltlqfdrvlrrestqwanvvimllnelslpvttwtlshalpvrwqm
    gdldagsnqvlintlelryqdmrmlgvkl
    

  • Chain 'G':
    Sequence, based on SEQRES records:
    >6raoG (G:)
    msllerglskltlnawkdregkipagsmsamynpetiqldyqtrfdtedtintasqsnry
    visepvglnltllfdsqmpgnttpietqlamlkslcavdaatgspyflritwgkmrwenk
    gwfagrardlsvtytlfdrdatplratvqlslvadesfviqqslktqsapdralvsvpdl
    aslpllalsaggvlassvdylslawdndldnlddfqtgdflratkgeev
    

    Sequence, based on observed residues (ATOM records):
    >6raoG (G:)
    sllerglskltlnawkdregkipagsmsamynpetiqldyqtrfdtedtintasqsnryv
    isepvglnltllfdsqmpgnttpietqlamlkslcavdaatgspyflritwgkmrwenkg
    wfagrardlsvtytlfdrdatplratvqlslvadesfviqqslktqsapdralvsvpdla
    slpllalsaggvlassvdylslawdndldnlddfqtgdflratk
    

  • Chain 'H':
    Sequence, based on SEQRES records:
    >6raoH (H:)
    msndilkatlgqcwafpprfspdtgvsltagveavmqslrvlfmtepgerimresygggm
    hdfifenitdellanihnrieesilrheprallkdviiqpdkqeasrlraqitvylagsd
    lvetvdgtlnihdgqtlrll
    

    Sequence, based on observed residues (ATOM records):
    >6raoH (H:)
    dilkatlgqcwafpprfspdtgvsltagveavmqslrvlfmtepgerimresygggmhdf
    ifenitdellanihnrieesilrheprallkdviiqpdkqeasrlraqitvylanihdgq
    tlrll
    

  • Chain 'I':
    Sequence, based on SEQRES records:
    >6raoI (I:)
    msdleqlkqilgngltdqtflleprtgkgllnlmakyteavpfaghtdadwkdfwmagct
    lealsdiyqypglaekklpvqqafllallhlletpramlntvparhrslyyrdllgfapr
    apqpdsvavsftlqrnsspyalpagslldggqdsagnsityqtddsllitgqqleqlcwt
    aqvgetwkrytaidsatgvtlpaeglrlftatgqgtdtkekapelylgfsgtsaqdtlsl
    ywsvrassaldvtwwyyqgtkwasldaelqdntaslsvsnlwrarlpadsqpgsglpqdd
    epleagyywikgtlkenkeakdenspaeampqlqavlanamtatlnvaqaiddshfsqpl
    pantinqlvtpvaaisdvrqplpsvggqpretemamlqraapriahrqraitwnnmrsll
    mehypeifdvrfpdvdklsrlpalevqslmvipdgrygdnddalrpalsngrlsrmaqwl
    sqytslwaaptlknpkyidvtaryrvtfvvgirpdygyrqlaaqlqhdympwatdrrqav
    tpgnqvdyyqllatlqqsplvqsvnalvlshdvidetgkptsmetqstvtarddevlilc
    pegethv
    

    Sequence, based on observed residues (ATOM records):
    >6raoI (I:)
    tflleprtgkgllnlmakyteavpfaghtdadwkdfwmagctlealsdiyqypglaekkl
    pvqqafllallhlletpramlntvparhrslyyrdllgfaprapqpdsvavsftlqrnss
    pyalpagslldggqdsagnsityqtddsllitgqqleqlapelylgfsgtsaqdtlslyw
    svrassaldvtwwyyqgtkwqavlanamtatlnvaqaiddshfsqplpantinqlvtpva
    aisdvrqplpsvggqpretemamlqraapriahrqraitwnnmrsllmehypeifdvrfp
    dvdklsrlpalevqslmvipdgralrpalsngrlsrmaqwlsqytslwaaptlknpkyid
    vtaryrvtfvvpdygyrqlaaqlqhdympwatdrpgnqvdyyqllatlqqsplvqsvnal
    vlshdtgkptsmetqstvtardd
    

  • Chain 'J':
    Sequence, based on SEQRES records:
    >6raoJ (J:)
    mskenalfpavkdaivfdalwqqahekvtalsgeiwtdtgdhdpgvtllqsatwncsdls
    yraslslndllthqdqstlfpeefgpeqvltcntvtaedyrralldvhssdiqaldtpeq
    dflfsdvsltqepkehrfhwwynaekreysfrkptdsgevnelklrgnlwlslvptrytq
    slspenlaaveqclaeflaahrnlgevvsritwlqpatfsprmtieladnigdinqvaaq
    iyqvtdaflrpavarytteqrralgdaddaifegprlkhgwqqtapsqitsggyvlnlgp
    lvnlllaipgvaslstlsvdkgdghitavtgdnlrwqvadgyypllwgapplsllagdds
    pltlvskggirntleseamagyltqadlivttptvlpagrfrdqtlyipigqrqpecyal
    qqpdtviddqtravhqfllpvdqlladgtaelaqlptllafknrgdairgtrwpytnamv
    qqaihqpyaktleaiaqqdaaiftqdkqpvggnyareldflqyllgyfgtqraalpltld
    lpdflatqraylaqqpalgydriniridqvsalqkriaarigldsicfadnpdlgqlpfy
    liehrqllpqtpdstfdseqtpsgfavaepditltqagsvgkvvqgqlidliaieggsrl
    hvsrllvikaegdsftvstensqqlhntlsrletawashnlrwqnsnvwlqdmdyrlnya
    eaklqpanpqqrllasnaqspypamvsvgdgivlrpaglqfympganatraatldadwql
    aatvkavdpiagtlliekaagstedfpsaessfryqwafsqanyattdrfsfvvsavlnr
    rlienpnivpeqlvawiqetimaefpahvslinhwlddatfnnfgvtysrwqnsgmplgd
    dafalmqiltlghlpvtqldiglmriateeqrtevigdgsqwhedvilreelfyvpkdvq
    ttl
    

    Sequence, based on observed residues (ATOM records):
    >6raoJ (J:)
    enalfpavkdaivfdalwqqahekvtalsgeiwtdtgdhdpgvtllqsatwncsdlsyra
    slslndllthqdqstlfpeefgpeqvltcntvtaedyrralldvhssfsdvsltqepkeh
    rfhwgnlwlslvptrytqslspenlaaveqclaeflaahrnlgevvsritwlqpatfspr
    mtieladninqvaaqiyqvtdaflrpavarytteqrralgdaddaifegprlkhgwqqta
    psqitsggyvlnlgplvnlllaipgvaslstlsvdkgdghitavtgdnlrwqvadgyypl
    lwgapplsllagddspltlvrntleseamagyltqadlivttptvlpagrfrdqtlyipi
    gqrqpecyalqqpdtviddqtravhqfllpvdqlladgtaelaqlptllafknrgdairg
    trwpytnamvqqaihqpyaktleaiaqqdaaiftqdkqpvggnyareldflqyllgyfgt
    qraalpltldlpdflatqraylaqqpalgydriniridqvsalqkriaarigldsicfad
    npdlgqlp