PDB entry 6ra3

View 6ra3 on RCSB PDB site
Description: structural basis for recognition and ring-cleavage of the pseudomonas quinolone signal (pqs) by aqdc in complex with its product
Deposited on 2019-04-05, released 2019-07-03
The last revision was dated 2020-06-24, with a file datestamp of 2020-06-19.
Experiment type: XRAY
Resolution: 2 Å
R-factor: N/A
AEROSPACI score: 0.31 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Putative dioxygenase (1H-3-hydroxy-4-oxoquinaldine 2,4-dioxygenase)
    Species: Mycobacteroides abscessus subsp. abscessus [TaxId:1185650]
    Gene: SAMEA2070698_02780, SAMEA2161603_04096, SAMEA2275805_05965
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: Putative dioxygenase (1H-3-hydroxy-4-oxoquinaldine 2,4-dioxygenase)
    Species: Mycobacteroides abscessus subsp. abscessus [TaxId:1185650]
    Gene: SAMEA2070698_02780, SAMEA2161603_04096, SAMEA2275805_05965
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: Putative dioxygenase (1H-3-hydroxy-4-oxoquinaldine 2,4-dioxygenase)
    Species: Mycobacteroides abscessus subsp. abscessus [TaxId:1185650]
    Gene: SAMEA2070698_02780, SAMEA2161603_04096, SAMEA2275805_05965
    Database cross-references and differences (RAF-indexed):
  • Heterogens: JWH, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6ra3A (A:)
mittktvngvqiafddqghepgpvfvtlsgwahdlraydgmlpylraaqrtvrvcwrghg
pdrnlvgdfgidemaadtiglldalevdsfvpiahahggwaaleiadrlgaqrvpavmil
dlimtpaprefvaalhgiqdperwkegrdglvqswlagttnqavldhvrydsgghgfdmw
aragrvideayrtwgspmrrmealaepcairhvfshpkigeydalhddfaarhpwfsyrr
lggethfpgielpqqvaaeaidllagari

    Sequence, based on observed residues (ATOM records):
    >6ra3A (A:)
mittktvngvqiafddqghepgpvfvtlsgwahdlraydgmlpylraaqrtvrvcwrghg
pdrnlvgdfgidemaadtiglldalevdsfvpiahahggwaaleiadrlgaqrvpavmil
dlimtpaprefvaalhgiqdperwkegrdglvqswlagttnqavldhvrydsgghgfdmw
aragrvideayrtwgspmrrmealaepcairhvfshpkigeydalhddfaarhpwfsyrr
lggethfpgielpqqvaaeaidllaga

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6ra3E (E:)
mittktvngvqiafddqghepgpvfvtlsgwahdlraydgmlpylraaqrtvrvcwrghg
pdrnlvgdfgidemaadtiglldalevdsfvpiahahggwaaleiadrlgaqrvpavmil
dlimtpaprefvaalhgiqdperwkegrdglvqswlagttnqavldhvrydsgghgfdmw
aragrvideayrtwgspmrrmealaepcairhvfshpkigeydalhddfaarhpwfsyrr
lggethfpgielpqqvaaeaidllagari

    Sequence, based on observed residues (ATOM records):
    >6ra3E (E:)
mittktvngvqiafddqghepgpvfvtlsgwahdlraydgmlpylraaqrtvrvcwrghg
pdrnlvgdfgidemaadtiglldalevdsfvpiahahggwaaleiadrlgaqrvpavmil
dlimtpaprefvaalhgiqdperwkegrdglvqswlagttnqavldhvrydsgghgfdmw
aragrvideayrtwgspmrrmealaepcairhvfshpkigeydalhddfaarhpwfsyrr
lggethfpgielpqqvaaeaidllaga

  • Chain 'F':
    Sequence, based on SEQRES records:
    >6ra3F (F:)
mittktvngvqiafddqghepgpvfvtlsgwahdlraydgmlpylraaqrtvrvcwrghg
pdrnlvgdfgidemaadtiglldalevdsfvpiahahggwaaleiadrlgaqrvpavmil
dlimtpaprefvaalhgiqdperwkegrdglvqswlagttnqavldhvrydsgghgfdmw
aragrvideayrtwgspmrrmealaepcairhvfshpkigeydalhddfaarhpwfsyrr
lggethfpgielpqqvaaeaidllagari

    Sequence, based on observed residues (ATOM records):
    >6ra3F (F:)
ittktvngvqiafddqghepgpvfvtlsgwahdlraydgmlpylraaqrtvrvcwrghgp
drnlvgdfgidemaadtiglldalevdsfvpiahahggwaaleiadrlgaqrvpavmild
limtpaprefvaalhgiqdperwkegrdglvqswlagttnqavldhvrydsgghgfdmwa
ragrvideayrtwgspmrrmealaepcairhvfshpkigeydalhddfaarhpwfsyrrl
ggethfpgielpqqvaaeaidllag