PDB entry 6r9h

View 6r9h on RCSB PDB site
Description: crystal structure of the pdz tandem of syntenin in complex with fragment c58
Deposited on 2019-04-03, released 2021-02-03
The last revision was dated 2021-02-03, with a file datestamp of 2021-01-29.
Experiment type: XRAY
Resolution: 2 Å
R-factor: N/A
AEROSPACI score: 0.4 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: syntenin-1
    Species: Homo sapiens [TaxId:9606]
    Gene: SDCBP, MDA9, SYCL
    Database cross-references and differences (RAF-indexed):
    • Uniprot O00560 (5-End)
      • expression tag (3-4)
  • Chain 'B':
    Compound: syntenin-1
    Species: Homo sapiens [TaxId:9606]
    Gene: SDCBP, MDA9, SYCL
    Database cross-references and differences (RAF-indexed):
    • Uniprot O00560 (5-End)
      • expression tag (3-4)
  • Chain 'C':
    Compound: syntenin-1
    Species: Homo sapiens [TaxId:9606]
    Gene: SDCBP, MDA9, SYCL
    Database cross-references and differences (RAF-indexed):
    • Uniprot O00560 (5-165)
      • expression tag (2-4)
  • Chain 'D':
    Compound: syntenin-1
    Species: Homo sapiens [TaxId:9606]
    Gene: SDCBP, MDA9, SYCL
    Database cross-references and differences (RAF-indexed):
    • Uniprot O00560 (5-165)
      • expression tag (3-4)
  • Heterogens: PO4, JVK, ACT, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6r9hA (A:)
gamdprevilckdqdgkiglrlksidngifvqlvqanspaslvglrfgdqvlqingenca
gwssdkahkvlkqafgekitmtirdrpfertitmhkdstghvgfifkngkitsivkdssa
arnglltehniceingqnviglkdsqiadilstsgtvvtitimpaf

    Sequence, based on observed residues (ATOM records):
    >6r9hA (A:)
dprevilckdqdgkiglrlksidngifvqlvqanspaslvglrfgdqvlqingencagws
sdkahkvlkqafgekitmtirdrpfertitmhkdstghvgfifkngkitsivkdssaarn
glltehniceingqnviglkdsqiadilstsgtvvtitimpa

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6r9hB (B:)
gamdprevilckdqdgkiglrlksidngifvqlvqanspaslvglrfgdqvlqingenca
gwssdkahkvlkqafgekitmtirdrpfertitmhkdstghvgfifkngkitsivkdssa
arnglltehniceingqnviglkdsqiadilstsgtvvtitimpaf

    Sequence, based on observed residues (ATOM records):
    >6r9hB (B:)
dprevilckdqdgkiglrlksidngifvqlvqanspaslvglrfgdqvlqingencagws
sdkahkvlkqafgekitmtirdrpfertitmhkdstghvgfifkngkitsivkdssaarn
glltehniceingqnviglkdsqiadilstsgtvvtitimpa

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6r9hC (C:)
gamdprevilckdqdgkiglrlksidngifvqlvqanspaslvglrfgdqvlqingenca
gwssdkahkvlkqafgekitmtirdrpfertitmhkdstghvgfifkngkitsivkdssa
arnglltehniceingqnviglkdsqiadilstsgtvvtitimpaf

    Sequence, based on observed residues (ATOM records):
    >6r9hC (C:)
mdprevilckdqdgkiglrlksidngifvqlvqanspaslvglrfgdqvlqingencagw
ssdkahkvlkqafgekitmtirdrpfertitmhkdstghvgfifkngkitsivkdssaar
nglltehniceingqnviglkdsqiadilstsgtvvtitimpaf

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6r9hD (D:)
gamdprevilckdqdgkiglrlksidngifvqlvqanspaslvglrfgdqvlqingenca
gwssdkahkvlkqafgekitmtirdrpfertitmhkdstghvgfifkngkitsivkdssa
arnglltehniceingqnviglkdsqiadilstsgtvvtitimpaf

    Sequence, based on observed residues (ATOM records):
    >6r9hD (D:)
dprevilckdqdgkiglrlksidngifvqlvqanspaslvglrfgdqvlqingencagws
sdkahkvlkqafgekitmtirdrpfertitmhkdstghvgfifkngkitsivkdssaarn
glltehniceingqnviglkdsqiadilstsgtvvtitimpaf