PDB entry 6r88

View 6r88 on RCSB PDB site
Description: Structure of Arabidopsis thaliana GLR3.3 ligand-binding domain in complex with glycine
Class: membrane protein
Keywords: glutamate receptor-like, amino acid-binding, membrane protein
Deposited on 2019-04-01, released 2020-01-01
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-01-15, with a file datestamp of 2020-01-10.
Experiment type: XRAY
Resolution: 1.6 Å
R-factor: N/A
AEROSPACI score: 0.44 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Glutamate receptor 3.3,Glutamate receptor 3.3
    Species: Arabidopsis thaliana [TaxId:3702]
    Gene: GLR3.3, At1g42540, T8D8.1
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9C8E7 (Start-110)
      • linker (111-113)
    • Uniprot Q9C8E7 (114-246)
    Domains in SCOPe 2.08: d6r88a_
  • Chain 'B':
    Compound: Glutamate receptor 3.3,Glutamate receptor 3.3
    Species: Arabidopsis thaliana [TaxId:3702]
    Gene: GLR3.3, At1g42540, T8D8.1
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9C8E7 (Start-110)
      • linker (111-113)
    • Uniprot Q9C8E7 (114-End)
    Domains in SCOPe 2.08: d6r88b_
  • Chain 'C':
    Compound: Glutamate receptor 3.3,Glutamate receptor 3.3
    Species: Arabidopsis thaliana [TaxId:3702]
    Gene: GLR3.3, At1g42540, T8D8.1
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9C8E7 (Start-110)
      • linker (111-113)
    • Uniprot Q9C8E7 (114-End)
    Domains in SCOPe 2.08: d6r88c_
  • Chain 'D':
    Compound: Glutamate receptor 3.3,Glutamate receptor 3.3
    Species: Arabidopsis thaliana [TaxId:3702]
    Gene: GLR3.3, At1g42540, T8D8.1
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9C8E7 (Start-110)
      • linker (111-113)
    • Uniprot Q9C8E7 (114-246)
    Domains in SCOPe 2.08: d6r88d_
  • Heterogens: GLY, GOL, NA, CL, SO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6r88A (A:)
gpmgkelkigvplrvsykefvsqirgtenmfkgfcidvftaavnllpyavpvkfipygng
kenpsythmvemittgnfdgvvgdvaivtnrtkivdftqpyaasglvvvapggtpikgie
slrerddpigyqvgsfaesylrnelnisesrlvplgtpeayakalkdgpskggvaaivde
rpyvelflssncayrivgqeftksgwgfafprdsplaidlstailelaengdlqrihdkw
lmknact

    Sequence, based on observed residues (ATOM records): (download) 
    >6r88A (A:)
elkigvplrvsykefvsqirgtenmfkgfcidvftaavnllpyavpvkfipygngkenps
ythmvemittgnfdgvvgdvaivtnrtkivdftqpyaasglvvvapggtpikgieslrer
ddpigyqvgsfaesylrnelnisesrlvplgtpeayakalkdgpskggvaaivderpyve
lflssncayrivgqeftksgwgfafprdsplaidlstailelaengdlqrihdkwlmkna
ct

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6r88B (B:)
gpmgkelkigvplrvsykefvsqirgtenmfkgfcidvftaavnllpyavpvkfipygng
kenpsythmvemittgnfdgvvgdvaivtnrtkivdftqpyaasglvvvapggtpikgie
slrerddpigyqvgsfaesylrnelnisesrlvplgtpeayakalkdgpskggvaaivde
rpyvelflssncayrivgqeftksgwgfafprdsplaidlstailelaengdlqrihdkw
lmknact

    Sequence, based on observed residues (ATOM records): (download) 
    >6r88B (B:)
elkigvplrvsykefvsqirgtenmfkgfcidvftaavnllpyavpvkfipygngkenps
ythmvemittgnfdgvvgdvaivtnrtkivdftqpyaasglvvvapggtpikgieslrer
ddpigyqvgsfaesylrnelnisesrlvplgtpeayakalkdgpskggvaaivderpyve
lflssncayrivgqeftksgwgfafprdsplaidlstailelaengdlqrihdkwlmc

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >6r88C (C:)
gpmgkelkigvplrvsykefvsqirgtenmfkgfcidvftaavnllpyavpvkfipygng
kenpsythmvemittgnfdgvvgdvaivtnrtkivdftqpyaasglvvvapggtpikgie
slrerddpigyqvgsfaesylrnelnisesrlvplgtpeayakalkdgpskggvaaivde
rpyvelflssncayrivgqeftksgwgfafprdsplaidlstailelaengdlqrihdkw
lmknact

    Sequence, based on observed residues (ATOM records): (download) 
    >6r88C (C:)
elkigvplrvsykefvsqirgtenmfkgfcidvftaavnllpyavpvkfipygngkenps
ythmvemittgnfdgvvgdvaivtnrtkivdftqpyaasglvvvapggtpikgieslrer
ddpigyqvgsfaesylrnelnisesrlvplgtpeayakalkdgpskggvaaivderpyve
lflssncayrivgqeftksgwgfafprdsplaidlstailelaengdlqrihdkwlmc

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >6r88D (D:)
gpmgkelkigvplrvsykefvsqirgtenmfkgfcidvftaavnllpyavpvkfipygng
kenpsythmvemittgnfdgvvgdvaivtnrtkivdftqpyaasglvvvapggtpikgie
slrerddpigyqvgsfaesylrnelnisesrlvplgtpeayakalkdgpskggvaaivde
rpyvelflssncayrivgqeftksgwgfafprdsplaidlstailelaengdlqrihdkw
lmknact

    Sequence, based on observed residues (ATOM records): (download) 
    >6r88D (D:)
kelkigvplrvsykefvsqirgtenmfkgfcidvftaavnllpyavpvkfipygngkenp
sythmvemittgnfdgvvgdvaivtnrtkivdftqpyaasglvvvapggtpikgieslre
rddpigyqvgsfaesylrnelnisesrlvplgtpeayakalkdgpskggvaaivderpyv
elflssncayrivgqeftksgwgfafprdsplaidlstailelaengdlqrihdkwlmkn
act