PDB entry 6r2s

View 6r2s on RCSB PDB site
Description: The structure of Plasmodium vivax Duffy binding protein (PvDBP) bound to human antibody DB9
Class: immune system
Keywords: Plasmodium vivax, Invasion, Broadly-neutralising human monoclonal antibody, IMMUNE SYSTEM
Deposited on 2019-03-18, released 2019-03-27
The last revision prior to the SCOPe 2.08 freeze date was dated 2019-09-04, with a file datestamp of 2019-08-30.
Experiment type: XRAY
Resolution: 3.04 Å
R-factor: N/A
AEROSPACI score: 0.13 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Antibody DB9 light chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6R2S
    Domains in SCOPe 2.08: d6r2sa1, d6r2sa2
  • Chain 'B':
    Compound: Antibody DB9 heavy chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6R2S
  • Chain 'C':
    Compound: Duffy receptor
    Species: Plasmodium vivax (strain Salvador I) [TaxId:126793]
    Gene: PVDR
    Database cross-references and differences (RAF-indexed):
    • Uniprot P22290 (2-End)
      • expression tag (0-1)
    Domains in SCOPe 2.08: d6r2sc1, d6r2sc2

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6r2sA (A:)
mgwsciilflvatatgvhgdivmtqspstlsasvgdrvtitcrasqsisswlawyqqrpg
kaprlliykassllsgvpsrfggsgsgtdftltisslqpddfatyhcqhyntypwtfgqg
tkveikrtvaapsvfifppsdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqe
svteqdskdstyslsstltlskadyekhkvyacevthqglsspvtksfnrgec

    Sequence, based on observed residues (ATOM records): (download) 
    >6r2sA (A:)
divmtqspstlsasvgdrvtitcrasqsisswlawyqqrpgkaprlliykassllsgvps
rfggsgsgtdftltisslqpddfatyhcqhyntypwtfgqgtkveikrtvaapsvfifpp
sdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsstlt
lskadyekhkvyacevthqglsspvtksfnrge

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >6r2sC (C:)
sgntvmkncnykrkrrerdwdcntkkdvcipdrryqlcmkeltnlvnntdtnfhrditfr
klylkrkliydaavegdlllklnnyrynkdfckdirwslgdfgdiimgtdmegigyskvv
ennlrsifgtdekaqqrrkqwwneskaqiwtammysvkkrlkgnfiwicklnvavniepq
iyrwirewgrdyvselptevqklkekcdgkinytdkkvckvppcqnacksydqwitrkkn
qwdvlsnkfisvknaekvqtagivtpydilkqeldefnevafeneinkrdgayielcvcs

    Sequence, based on observed residues (ATOM records): (download) 
    >6r2sC (C:)
sgntvmkncnykrkrrerdwdcntkkdvcipdrryqlcmkeltnlvnntdtnfhrditfr
klylkrkliydaavegdlllklnnyrynkdfckdirwslgdfgdiimgtdmegigyskvv
ennlrsifgtdekaqqrrkqwwneskaqiwtammysvkkrlkgnfiwicklnvavniepq
iyrwirewgrdyvselptevqklkekcdgkinytdkkvckvppcqnacksydqwitrkkn
qwdvlsnkfisvknaekvqtagivtpydilkqeldefnevafeneinkrdgayielcvc