SCOPe 2.08: Structural Classification of Proteins

PDB entry 6r2d

View 6r2d on RCSB PDB site
Description: crystal structure of the suca domain of mycobacterium smegmatis kgd after soaking with succinylphosphonate phosphonoethyl ester, followed by temperature increase
Deposited on 2019-03-15, released 2019-09-11
The last revision was dated 2019-11-06, with a file datestamp of 2019-11-01.
Experiment type: XRAY
Resolution: 2.3 Å
R-factor: N/A
AEROSPACI score: 0.24 (click here for full SPACI score report)

Chains and heterogens:

Chain 'A':
Compound: multifunctional 2-oxoglutarate metabolism enzyme
Species: Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155) [TaxId:246196]
Gene: kgd, sucA, MSMEG_5049, MSMEI_4922
Database cross-references and differences (RAF-indexed):
- Uniprot A0R2B1 (Start-867)
Chain 'B':
Compound: multifunctional 2-oxoglutarate metabolism enzyme
Species: Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155) [TaxId:246196]
Gene: kgd, sucA, MSMEG_5049, MSMEI_4922
Database cross-references and differences (RAF-indexed):
- Uniprot A0R2B1 (Start-867)
Chain 'C':
Compound: multifunctional 2-oxoglutarate metabolism enzyme
Species: Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155) [TaxId:246196]
Gene: kgd, sucA, MSMEG_5049, MSMEI_4922
Database cross-references and differences (RAF-indexed):
- Uniprot A0R2B1 (Start-867)
Chain 'D':
Compound: multifunctional 2-oxoglutarate metabolism enzyme
Species: Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155) [TaxId:246196]
Gene: kgd, sucA, MSMEG_5049, MSMEI_4922
Database cross-references and differences (RAF-indexed):
- Uniprot A0R2B1 (Start-867)
Heterogens: ZP1, MG, CA, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

Chain 'A':
Sequence, based on SEQRES records:

>6r2dA (A:)
gdsiedknarvieliaayrnrghlmadidplrldntrfrshpdldvnshgltlwdldref
kvdgfagvqrkklrdilsvlrdaycrhvgveythilepeqqrwiqervetkhdkptvaeq
kyilsklnaaeafetflqtkyvgqkrfslegaetvipmmdavidqcaehgldevviamph
rgrlnvlanivgkpysqifsefegnlnpsqahgsgdvkyhlgatgtyiqmfgdndievsl
tanpshleavdpvleglvrakqdlldtgeegsdnrfsvvplmlhgdaafagqgvvaetln
lallrgyrtggtihivvnnqigfttaptdsrsseyctdvakmigapifhvngddpeacaw
varlavdfrqafkkdvvidmlcyrrrghnegddpsmtqpymydvidtkrgsrkayteali
grgdismkeaedalrdyqgqlervfnevrelekheiepsesveadqqipsklatavdkam
lqrigdahlalpegftvhprvrpvlekrremayegridwafaellalgsliaegklvrls
gqdtqrgtftqrhavivdrktgeeftplqllatnpdgtptggkflvynsalsefaavgfe
ygysvgnpdamvlweaqfgdfvngaqsiidefissgeakwgqlsdvvlllphghegqgpd
htsgrierflqlwaegsmtiampstpanyfhllrrhgkdgiqrplivftpksmlrnkaav
sdirdfteskfrsvleepmytdgegdrnkvtrllltsgkiyyelaarkakenredvaivr
ieqlaplprrrlaetldrypnvkekfwvqeepanqgawpsfgltlpeilpdhftglkris
rramsapssgsskvhaveqqeildtafg

Sequence, based on observed residues (ATOM records):

>6r2dA (A:)
knarvieliaayrnrghlmadidplrldntrfrsltlwdldrefqrkklrdilsvlrday
crhvgveythilepeqqrwiqervetkhdkptvaeqkyilsklnaaeafetflqtkyvgq
krfslegaetvipmmdavidqcaehgldevviamphrgrlnvlanivgkpysqifsefdv
kyhlgatgtyiqmfgdndievsltanpshleavdpvleglvrakqdlldtgeegsdnrfs
vvplmlhgdaafagqgvvaetlnlallrgyrtggtihivvnnqigfttaptdsrsseyct
dvakmigapifhvngddpeacawvarlavdfrqafkkdvvidmlcyrrrghnegddpsmt
qpymydvidtkrgsrkaytealigrgdismkeaedalrdyqgqlervfnevrelekhlat
avdkamlqrigdahlalpegftvhprvrpvlekrremayegridwafaellalgsliaeg
klvrlsgqdtqrgtftqrhavivdrktgeeftplqllatnpdgtptggkflvynsalsef
aavgfeygysvgnpdamvlweaqfgdfvngaqsiidefissgeakwgqlsdvvlllphgh
egqgpdhtsgrierflqlwaegsmtiampstpanyfhllrrhgkdgiqrplivftpksml
rnkaavsdirdfteskfrsvleepmytdgegdrnkvtrllltsgkiyyelaarkakenre
dvaivrieqlaplprrrlaetldrypnvkekfwvqeepanqgawpsfgltlpeilpdhft
glkrisrramsapssgsskvhaveqqeildtafg

Chain 'B':
Sequence, based on SEQRES records:

>6r2dB (B:)
gdsiedknarvieliaayrnrghlmadidplrldntrfrshpdldvnshgltlwdldref
kvdgfagvqrkklrdilsvlrdaycrhvgveythilepeqqrwiqervetkhdkptvaeq
kyilsklnaaeafetflqtkyvgqkrfslegaetvipmmdavidqcaehgldevviamph
rgrlnvlanivgkpysqifsefegnlnpsqahgsgdvkyhlgatgtyiqmfgdndievsl
tanpshleavdpvleglvrakqdlldtgeegsdnrfsvvplmlhgdaafagqgvvaetln
lallrgyrtggtihivvnnqigfttaptdsrsseyctdvakmigapifhvngddpeacaw
varlavdfrqafkkdvvidmlcyrrrghnegddpsmtqpymydvidtkrgsrkayteali
grgdismkeaedalrdyqgqlervfnevrelekheiepsesveadqqipsklatavdkam
lqrigdahlalpegftvhprvrpvlekrremayegridwafaellalgsliaegklvrls
gqdtqrgtftqrhavivdrktgeeftplqllatnpdgtptggkflvynsalsefaavgfe
ygysvgnpdamvlweaqfgdfvngaqsiidefissgeakwgqlsdvvlllphghegqgpd
htsgrierflqlwaegsmtiampstpanyfhllrrhgkdgiqrplivftpksmlrnkaav
sdirdfteskfrsvleepmytdgegdrnkvtrllltsgkiyyelaarkakenredvaivr
ieqlaplprrrlaetldrypnvkekfwvqeepanqgawpsfgltlpeilpdhftglkris
rramsapssgsskvhaveqqeildtafg

Sequence, based on observed residues (ATOM records):

>6r2dB (B:)
dknarvieliaayrnrghlmadidplrldntrflwdldrefkqrkklrdilsvlrdaycr
hvgveythilepeqqrwiqervetkhdkptvaeqkyilsklnaaeafetflqtkyvgqkr
fslegaetvipmmdavidqcaehgldevviamphrgrlnvlanivgkpysqifsefdvky
hlgatgtyiqmfgdndievsltanpshleavdpvleglvrakqdlldtgeegsdnrfsvv
plmlhgdaafagqgvvaetlnlallrgyrtggtihivvnnqigfttaptdsrsseyctdv
akmigapifhvngddpeacawvarlavdfrqafkkdvvidmlcyrrrghnegddpsmtqp
ymydvidtkrgsrkaytealigrgdismkeaedalrdyqgqlervfnevrelekhlatav
dkamlqrigdahlalpegftvhprvrpvlekrremayegridwafaellalgsliaegkl
vrlsgqdtqrgtftqrhavivdrktgeeftplqllatnpdgtptggkflvynsalsefaa
vgfeygysvgnpdamvlweaqfgdfvngaqsiidefissgeakwgqlsdvvlllphgheg
qgpdhtsgrierflqlwaegsmtiampstpanyfhllrrhgkdgiqrplivftpksmlrn
kaavsdirdfteskfrsvleepmytdgegdrnkvtrllltsgkiyyelaarkakenredv
aivrieqlaplprrrlaetldrypnvkekfwvqeepanqgawpsfgltlpeilpdhftgl
krisrramsapssgsskvhaveqqeildtafg

Chain 'C':
Sequence, based on SEQRES records:

>6r2dC (C:)
gdsiedknarvieliaayrnrghlmadidplrldntrfrshpdldvnshgltlwdldref
kvdgfagvqrkklrdilsvlrdaycrhvgveythilepeqqrwiqervetkhdkptvaeq
kyilsklnaaeafetflqtkyvgqkrfslegaetvipmmdavidqcaehgldevviamph
rgrlnvlanivgkpysqifsefegnlnpsqahgsgdvkyhlgatgtyiqmfgdndievsl
tanpshleavdpvleglvrakqdlldtgeegsdnrfsvvplmlhgdaafagqgvvaetln
lallrgyrtggtihivvnnqigfttaptdsrsseyctdvakmigapifhvngddpeacaw
varlavdfrqafkkdvvidmlcyrrrghnegddpsmtqpymydvidtkrgsrkayteali
grgdismkeaedalrdyqgqlervfnevrelekheiepsesveadqqipsklatavdkam
lqrigdahlalpegftvhprvrpvlekrremayegridwafaellalgsliaegklvrls
gqdtqrgtftqrhavivdrktgeeftplqllatnpdgtptggkflvynsalsefaavgfe
ygysvgnpdamvlweaqfgdfvngaqsiidefissgeakwgqlsdvvlllphghegqgpd
htsgrierflqlwaegsmtiampstpanyfhllrrhgkdgiqrplivftpksmlrnkaav
sdirdfteskfrsvleepmytdgegdrnkvtrllltsgkiyyelaarkakenredvaivr
ieqlaplprrrlaetldrypnvkekfwvqeepanqgawpsfgltlpeilpdhftglkris
rramsapssgsskvhaveqqeildtafg

Sequence, based on observed residues (ATOM records):

>6r2dC (C:)
knarvieliaayrnrghlmadidplrldntrftlwdldrefkklrdilsvlrdaycrhvg
veythilepeqqrwiqervetkhdkptvaeqkyilsklnaaeafetflqtkyvgqkrfsl
egaetvipmmdavidqcaehgldevviamphrgrlnvlanivgkpysqifsevkyhlgat
gtyiqmfgdndievsltanpshleavdpvleglvrakqdlldtgeegsdnrfsvvplmlh
gdaafagqgvvaetlnlallrgyrtggtihivvnnqigfttaptdsrsseyctdvakmig
apifhvngddpeacawvarlavdfrqafkkdvvidmlcyrrrghnegddpsmtqpymydv
idtkrgsrkaytealigrgdismkeaedalrdyqgqlervfnevrelekhelatavdkam
lqrigdahlalpegftvhprvrpvlekrremayegridwafaellalgsliaegklvrls
gqdtqrgtftqrhavivdrktgeeftplqllatnpdgtptggkflvynsalsefaavgfe
ygysvgnpdamvlweaqfgdfvngaqsiidefissgeakwgqlsdvvlllphghegqgpd
htsgrierflqlwaegsmtiampstpanyfhllrrhgkdgiqrplivftpksmlrnkaav
sdirdfteskfrsvleepmytdgegdrnkvtrllltsgkiyyelaarkakenredvaivr
ieqlaplprrrlaetldrypnvkekfwvqeepanqgawpsfgltlpeilpdhftglkris
rramsapssgsskvhaveqqeildtafg

Chain 'D':
Sequence, based on SEQRES records:

>6r2dD (D:)
gdsiedknarvieliaayrnrghlmadidplrldntrfrshpdldvnshgltlwdldref
kvdgfagvqrkklrdilsvlrdaycrhvgveythilepeqqrwiqervetkhdkptvaeq
kyilsklnaaeafetflqtkyvgqkrfslegaetvipmmdavidqcaehgldevviamph
rgrlnvlanivgkpysqifsefegnlnpsqahgsgdvkyhlgatgtyiqmfgdndievsl
tanpshleavdpvleglvrakqdlldtgeegsdnrfsvvplmlhgdaafagqgvvaetln
lallrgyrtggtihivvnnqigfttaptdsrsseyctdvakmigapifhvngddpeacaw
varlavdfrqafkkdvvidmlcyrrrghnegddpsmtqpymydvidtkrgsrkayteali
grgdismkeaedalrdyqgqlervfnevrelekheiepsesveadqqipsklatavdkam
lqrigdahlalpegftvhprvrpvlekrremayegridwafaellalgsliaegklvrls
gqdtqrgtftqrhavivdrktgeeftplqllatnpdgtptggkflvynsalsefaavgfe
ygysvgnpdamvlweaqfgdfvngaqsiidefissgeakwgqlsdvvlllphghegqgpd
htsgrierflqlwaegsmtiampstpanyfhllrrhgkdgiqrplivftpksmlrnkaav
sdirdfteskfrsvleepmytdgegdrnkvtrllltsgkiyyelaarkakenredvaivr
ieqlaplprrrlaetldrypnvkekfwvqeepanqgawpsfgltlpeilpdhftglkris
rramsapssgsskvhaveqqeildtafg

Sequence, based on observed residues (ATOM records):

>6r2dD (D:)
narvieliaayrnrghlmadidplrldntrfwdldrefrkklrdilsvlrdaycrhvgve
ythilepeqqrwiqervetkhdkptvaeqkyilsklnaaeafetflqtkyvgqkrfsleg
aetvipmmdavidqcaehgldevviamphrgrlnvlanivgkpysqifsefegdvkyhlg
atgtyiqmfgdndievsltanpshleavdpvleglvrakqdlldtgeegsdnrfsvvplm
lhgdaafagqgvvaetlnlallrgyrtggtihivvnnqigfttaptdsrsseyctdvakm
igapifhvngddpeacawvarlavdfrqafkkdvvidmlcyrrrghnegddpsmtqpymy
dvidtkrgsrkaytealigrgdismkeaedalrdyqgqlervfnevrelekheilatavd
kamlqrigdahlalpegftvhprvrpvlekrremayegridwafaellalgsliaegklv
rlsgqdtqrgtftqrhavivdrktgeeftplqllatnpdgtptggkflvynsalsefaav
gfeygysvgnpdamvlweaqfgdfvngaqsiidefissgeakwgqlsdvvlllphghegq
gpdhtsgrierflqlwaegsmtiampstpanyfhllrrhgkdgiqrplivftpksmlrnk
aavsdirdfteskfrsvleepmytdgegdrnkvtrllltsgkiyyelaarkakenredva
ivrieqlaplprrrlaetldrypnvkekfwvqeepanqgawpsfgltlpeilpdhftglk
risrramsapssgsskvhaveqqeildtafg