PDB entry 6r2a

View 6r2a on RCSB PDB site
Description: crystal structure of the suca domain of mycobacterium smegmatis kgd cocrystallized with succinylphosphonate phosphonoethyl ester (pesp)
Deposited on 2019-03-15, released 2019-09-11
The last revision was dated 2019-11-06, with a file datestamp of 2019-11-01.
Experiment type: XRAY
Resolution: 1.7 Å
R-factor: N/A
AEROSPACI score: 0.4 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: multifunctional 2-oxoglutarate metabolism enzyme
    Species: Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155) [TaxId:246196]
    Gene: kgd, sucA, MSMEG_5049, MSMEI_4922
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: multifunctional 2-oxoglutarate metabolism enzyme
    Species: Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155) [TaxId:246196]
    Gene: kgd, sucA, MSMEG_5049, MSMEI_4922
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0R2B1 (1-867)
      • expression tag (0)
  • Heterogens: ZP1, MG, MPD, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6r2aA (A:)
    gdsiedknarvieliaayrnrghlmadidplrldntrfrshpdldvnshgltlwdldref
    kvdgfagvqrkklrdilsvlrdaycrhvgveythilepeqqrwiqervetkhdkptvaeq
    kyilsklnaaeafetflqtkyvgqkrfslegaetvipmmdavidqcaehgldevviamph
    rgrlnvlanivgkpysqifsefegnlnpsqahgsgdvkyhlgatgtyiqmfgdndievsl
    tanpshleavdpvleglvrakqdlldtgeegsdnrfsvvplmlhgdaafagqgvvaetln
    lallrgyrtggtihivvnnqigfttaptdsrsseyctdvakmigapifhvngddpeacaw
    varlavdfrqafkkdvvidmlcyrrrghnegddpsmtqpymydvidtkrgsrkayteali
    grgdismkeaedalrdyqgqlervfnevrelekheiepsesveadqqipsklatavdkam
    lqrigdahlalpegftvhprvrpvlekrremayegridwafaellalgsliaegklvrls
    gqdtqrgtftqrhavivdrktgeeftplqllatnpdgtptggkflvynsalsefaavgfe
    ygysvgnpdamvlweaqfgdfvngaqsiidefissgeakwgqlsdvvlllphghegqgpd
    htsgrierflqlwaegsmtiampstpanyfhllrrhgkdgiqrplivftpksmlrnkaav
    sdirdfteskfrsvleepmytdgegdrnkvtrllltsgkiyyelaarkakenredvaivr
    ieqlaplprrrlaetldrypnvkekfwvqeepanqgawpsfgltlpeilpdhftglkris
    rramsapssgsskvhaveqqeildtafg
    

    Sequence, based on observed residues (ATOM records):
    >6r2aA (A:)
    knarvieliaayrnrghlmadidplrldltlwdldrefkvdgfagvqrkklrdilsvlrd
    aycrhvgveythilepeqqrwiqervetkhdkptvaeqkyilsklnaaeafetflqtkyv
    gqkrfslegaetvipmmdavidqcaehgldevviamphrgrlnvlanivgkpysqifsef
    egnlnpsqahgsgdvkyhlgatgtyiqmfgdndievsltanpshleavdpvleglvrakq
    dlldtgeegsdnrfsvvplmlhgdaafagqgvvaetlnlallrgyrtggtihivvnnqig
    fttaptdsrsseyctdvakmigapifhvngddpeacawvarlavdfrqafkkdvvidmlc
    yrrrghnegddpsmtqpymydvidtkrgsrkaytealigrgdismkeaedalrdyqgqle
    rvfnevrelekheiepsesveadqqipsklatavdkamlqrigdahlalpegftvhprvr
    pvlekrremayegridwafaellalgsliaegklvrlsgqdtqrgtftqrhavivdrktg
    eeftplqllatnpdgtptggkflvynsalsefaavgfeygysvgnpdamvlweaqfgdfv
    ngaqsiidefissgeakwgqlsdvvlllphghegqgpdhtsgrierflqlwaegsmtiam
    pstpanyfhllrrhgkdgiqrplivftpksmlrnkaavsdirdfteskfrsvleepmytd
    gegdrnkvtrllltsgkiyyelaarkakenredvaivrieqlaplprrrlaetldrypnv
    kekfwvqeepanqgawpsfgltlpeilpdhftglkrisrramsapssgsskvhaveqqei
    ldtafg
    

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6r2aB (B:)
    gdsiedknarvieliaayrnrghlmadidplrldntrfrshpdldvnshgltlwdldref
    kvdgfagvqrkklrdilsvlrdaycrhvgveythilepeqqrwiqervetkhdkptvaeq
    kyilsklnaaeafetflqtkyvgqkrfslegaetvipmmdavidqcaehgldevviamph
    rgrlnvlanivgkpysqifsefegnlnpsqahgsgdvkyhlgatgtyiqmfgdndievsl
    tanpshleavdpvleglvrakqdlldtgeegsdnrfsvvplmlhgdaafagqgvvaetln
    lallrgyrtggtihivvnnqigfttaptdsrsseyctdvakmigapifhvngddpeacaw
    varlavdfrqafkkdvvidmlcyrrrghnegddpsmtqpymydvidtkrgsrkayteali
    grgdismkeaedalrdyqgqlervfnevrelekheiepsesveadqqipsklatavdkam
    lqrigdahlalpegftvhprvrpvlekrremayegridwafaellalgsliaegklvrls
    gqdtqrgtftqrhavivdrktgeeftplqllatnpdgtptggkflvynsalsefaavgfe
    ygysvgnpdamvlweaqfgdfvngaqsiidefissgeakwgqlsdvvlllphghegqgpd
    htsgrierflqlwaegsmtiampstpanyfhllrrhgkdgiqrplivftpksmlrnkaav
    sdirdfteskfrsvleepmytdgegdrnkvtrllltsgkiyyelaarkakenredvaivr
    ieqlaplprrrlaetldrypnvkekfwvqeepanqgawpsfgltlpeilpdhftglkris
    rramsapssgsskvhaveqqeildtafg
    

    Sequence, based on observed residues (ATOM records):
    >6r2aB (B:)
    gdsiedknarvieliaayrnrghlmadidplrldldvnshgltlwdldrefkvdvqrkkl
    rdilsvlrdaycrhvgveythilepeqqrwiqervetkhdkptvaeqkyilsklnaaeaf
    etflqtkyvgqkrfslegaetvipmmdavidqcaehgldevviamphrgrlnvlanivgk
    pysqifsefegnlnpsqahgsgdvkyhlgatgtyiqmfgdndievsltanpshleavdpv
    leglvrakqdlldtgeegsdnrfsvvplmlhgdaafagqgvvaetlnlallrgyrtggti
    hivvnnqigfttaptdsrsseyctdvakmigapifhvngddpeacawvarlavdfrqafk
    kdvvidmlcyrrrghnegddpsmtqpymydvidtkrgsrkaytealigrgdismkeaeda
    lrdyqgqlervfnevrelekheiepsesveadqqipsklatavdkamlqrigdahlalpe
    gftvhprvrpvlekrremayegridwafaellalgsliaegklvrlsgqdtqrgtftqrh
    avivdrktgeeftplqllatnpdgtptggkflvynsalsefaavgfeygysvgnpdamvl
    weaqfgdfvngaqsiidefissgeakwgqlsdvvlllphghegqgpdhtsgrierflqlw
    aegsmtiampstpanyfhllrrhgkdgiqrplivftpksmlrnkaavsdirdfteskfrs
    vleepmytdgegdrnkvtrllltsgkiyyelaarkakenredvaivrieqlaplprrrla
    etldrypnvkekfwvqeepanqgawpsfgltlpeilpdhftglkrisrramsapssgssk
    vhaveqqeildtafg