PDB entry 6r23

View 6r23 on RCSB PDB site
Description: the structure of a ty3 retrotransposon capsid c-terminal domain dimer
Deposited on 2019-03-15, released 2019-05-08
The last revision was dated 2019-11-06, with a file datestamp of 2019-11-01.
Experiment type: EM
Resolution: 4.9 Å
R-factor: N/A
AEROSPACI score: -0 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Transposon Ty3-I Gag-Pol polyprotein
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Gene: TY3B-I, YILWTy3-1 POL, YIL082W-A
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Transposon Ty3-I Gag-Pol polyprotein
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Gene: TY3B-I, YILWTy3-1 POL, YIL082W-A
    Database cross-references and differences (RAF-indexed):

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6r23A (A:)
msfmdqipgggnypklpveclpnfpiqpsltfrgrndshklknfiseimlnmsmiswpnd
asrivycrrhllnpaaqwandfvqeqgileitfdtfiqglyqhfykppdinkifnaitql
seaklgierlnqrfrkiwdrmppdfmtekaaimtytrlltketynivrmhkpetlkdame
eayqttalterffpgfeldadgdtiigatthlqeeydsdydsednltqnryvhtvrtrrs
ynkpmsnhrnrrnnnasreeciknrlcfyckkeghrlnecrarkavltdleleskdqqtl
fiktlpivh

    Sequence, based on observed residues (ATOM records):
    >6r23A (A:)
ykppdinkifnaitqlseaklgierlnqrfrkiwdrmppdfmtekaaimtytrlltkety
nivrmhkpetlkdameeayqttalterffpg

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6r23B (B:)
msfmdqipgggnypklpveclpnfpiqpsltfrgrndshklknfiseimlnmsmiswpnd
asrivycrrhllnpaaqwandfvqeqgileitfdtfiqglyqhfykppdinkifnaitql
seaklgierlnqrfrkiwdrmppdfmtekaaimtytrlltketynivrmhkpetlkdame
eayqttalterffpgfeldadgdtiigatthlqeeydsdydsednltqnryvhtvrtrrs
ynkpmsnhrnrrnnnasreeciknrlcfyckkeghrlnecrarkavltdleleskdqqtl
fiktlpivh

    Sequence, based on observed residues (ATOM records):
    >6r23B (B:)
ykppdinkifnaitqlseaklgierlnqrfrkiwdrmppdfmtekaaimtytrlltkety
nivrmhkpetlkdameeayqttalterffpg