PDB entry 6qzo

View 6qzo on RCSB PDB site
Description: crystal structure of dyp-type peroxidase from cellulomonas bogoriensis
Deposited on 2019-03-12, released 2019-04-03
The last revision was dated 2019-04-10, with a file datestamp of 2019-04-05.
Experiment type: XRAY
Resolution: 2.4 Å
R-factor: N/A
AEROSPACI score: 0.22 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Peroxidase
    Species: Cellulomonas bogoriensis 69B4 = DSM 16987 [TaxId:1386082]
    Gene: N869_13850
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Peroxidase
    Species: Cellulomonas bogoriensis 69B4 = DSM 16987 [TaxId:1386082]
    Gene: N869_13850
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Peroxidase
    Species: Cellulomonas bogoriensis 69B4 = DSM 16987 [TaxId:1386082]
    Gene: N869_13850
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Peroxidase
    Species: Cellulomonas bogoriensis 69B4 = DSM 16987 [TaxId:1386082]
    Gene: N869_13850
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: Peroxidase
    Species: Cellulomonas bogoriensis 69B4 = DSM 16987 [TaxId:1386082]
    Gene: N869_13850
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: Peroxidase
    Species: Cellulomonas bogoriensis 69B4 = DSM 16987 [TaxId:1386082]
    Gene: N869_13850
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: Peroxidase
    Species: Cellulomonas bogoriensis 69B4 = DSM 16987 [TaxId:1386082]
    Gene: N869_13850
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: Peroxidase
    Species: Cellulomonas bogoriensis 69B4 = DSM 16987 [TaxId:1386082]
    Gene: N869_13850
    Database cross-references and differences (RAF-indexed):
  • Heterogens: HEM, PGE, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6qzoA (A:)
mgagagarwgsrapeapqparaagpgdvvvpchgehqagivtpppsfialvaldlastsd
rasverllrvwtvdierlttgrpgladsepelalvpaaltvtvgfgpglltaaglrhrap
awlhplppfgidrldpawcdgdvvlqvcaddrttlahavrvltkeaqglasvrwvqrgfr
rspgisepdgtsmrnlmgqvegtanldprtdpdllwhrdgepgwltggtsmvvrriamnl
dtwdelsrgareatigrtlrtgapltgraehdepdlealddhgrpvidleahirrarptq
reetflrraynydeapppgrasdsgllfvtyqrdvdaqftpvqrrldaadllnewtfpvg
savfavpggwsageyvgqrlleg

    Sequence, based on observed residues (ATOM records):
    >6qzoA (A:)
agpgdvvvpchgehqagivtpppsfialvaldlastsdrasverllrvwtvdierlttgr
pgladsepelalvpaaltvtvgfgpglltaaglrhrapawlhplppfgidrldpawcdgd
vvlqvcaddrttlahavrvltkeaqglasvrwvqrgfrrspgisepdgtsmrnlmgqveg
tanldprtdpdllwhrdgepgwltggtsmvvrriamnldtwdelsrgareatigrtlrtg
apltgraehdepdlealddhgrpvidleahirrarptqreetflrraynydeapppgras
dsgllfvtyqrdvdaqftpvqrrldaadllnewtfpvgsavfavpggwsageyvgqrlle
g

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6qzoB (B:)
mgagagarwgsrapeapqparaagpgdvvvpchgehqagivtpppsfialvaldlastsd
rasverllrvwtvdierlttgrpgladsepelalvpaaltvtvgfgpglltaaglrhrap
awlhplppfgidrldpawcdgdvvlqvcaddrttlahavrvltkeaqglasvrwvqrgfr
rspgisepdgtsmrnlmgqvegtanldprtdpdllwhrdgepgwltggtsmvvrriamnl
dtwdelsrgareatigrtlrtgapltgraehdepdlealddhgrpvidleahirrarptq
reetflrraynydeapppgrasdsgllfvtyqrdvdaqftpvqrrldaadllnewtfpvg
savfavpggwsageyvgqrlleg

    Sequence, based on observed residues (ATOM records):
    >6qzoB (B:)
agpgdvvvpchgehqagivtpppsfialvaldlastsdrasverllrvwtvdierlttgr
pgladsepelalvpaaltvtvgfgpglltaaglrhrapawlhplppfgidrldpawcdgd
vvlqvcaddrttlahavrvltkeaqglasvrwvqrgfrrspgisepdgtsmrnlmgqveg
tanldprtdpdllwhrdgepgwltggtsmvvrriamnldtwdelsrgareatigrtlrtg
apltgraehdepdlealddhgrpvidleahirrarptqreetflrraynydeapppgras
dsgllfvtyqrdvdaqftpvqrrldaadllnewtfpvgsavfavpggwsageyvgqrlle
g

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6qzoC (C:)
mgagagarwgsrapeapqparaagpgdvvvpchgehqagivtpppsfialvaldlastsd
rasverllrvwtvdierlttgrpgladsepelalvpaaltvtvgfgpglltaaglrhrap
awlhplppfgidrldpawcdgdvvlqvcaddrttlahavrvltkeaqglasvrwvqrgfr
rspgisepdgtsmrnlmgqvegtanldprtdpdllwhrdgepgwltggtsmvvrriamnl
dtwdelsrgareatigrtlrtgapltgraehdepdlealddhgrpvidleahirrarptq
reetflrraynydeapppgrasdsgllfvtyqrdvdaqftpvqrrldaadllnewtfpvg
savfavpggwsageyvgqrlleg

    Sequence, based on observed residues (ATOM records):
    >6qzoC (C:)
agpgdvvvpchgehqagivtpppsfialvaldlastsdrasverllrvwtvdierlttgr
pgladsepelalvpaaltvtvgfgpglltaaglrhrapawlhplppfgidrldpawcdgd
vvlqvcaddrttlahavrvltkeaqglasvrwvqrgfrrspgisepdgtsmrnlmgqveg
tanldprtdpdllwhrdgepgwltggtsmvvrriamnldtwdelsrgareatigrtlrtg
apltgraehdepdlealddhgrpvidleahirrarptqreetflrraynydeapppgras
dsgllfvtyqrdvdaqftpvqrrldaadllnewtfpvgsavfavpggwsageyvgqrlle
g

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6qzoD (D:)
mgagagarwgsrapeapqparaagpgdvvvpchgehqagivtpppsfialvaldlastsd
rasverllrvwtvdierlttgrpgladsepelalvpaaltvtvgfgpglltaaglrhrap
awlhplppfgidrldpawcdgdvvlqvcaddrttlahavrvltkeaqglasvrwvqrgfr
rspgisepdgtsmrnlmgqvegtanldprtdpdllwhrdgepgwltggtsmvvrriamnl
dtwdelsrgareatigrtlrtgapltgraehdepdlealddhgrpvidleahirrarptq
reetflrraynydeapppgrasdsgllfvtyqrdvdaqftpvqrrldaadllnewtfpvg
savfavpggwsageyvgqrlleg

    Sequence, based on observed residues (ATOM records):
    >6qzoD (D:)
agpgdvvvpchgehqagivtpppsfialvaldlastsdrasverllrvwtvdierlttgr
pgladsepelalvpaaltvtvgfgpglltaaglrhrapawlhplppfgidrldpawcdgd
vvlqvcaddrttlahavrvltkeaqglasvrwvqrgfrrspgisepdgtsmrnlmgqveg
tanldprtdpdllwhrdgepgwltggtsmvvrriamnldtwdelsrgareatigrtlrtg
apltgraehdepdlealddhgrpvidleahirrarptqreetflrraynydeapppgras
dsgllfvtyqrdvdaqftpvqrrldaadllnewtfpvgsavfavpggwsageyvgqrlle
g

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6qzoE (E:)
mgagagarwgsrapeapqparaagpgdvvvpchgehqagivtpppsfialvaldlastsd
rasverllrvwtvdierlttgrpgladsepelalvpaaltvtvgfgpglltaaglrhrap
awlhplppfgidrldpawcdgdvvlqvcaddrttlahavrvltkeaqglasvrwvqrgfr
rspgisepdgtsmrnlmgqvegtanldprtdpdllwhrdgepgwltggtsmvvrriamnl
dtwdelsrgareatigrtlrtgapltgraehdepdlealddhgrpvidleahirrarptq
reetflrraynydeapppgrasdsgllfvtyqrdvdaqftpvqrrldaadllnewtfpvg
savfavpggwsageyvgqrlleg

    Sequence, based on observed residues (ATOM records):
    >6qzoE (E:)
agpgdvvvpchgehqagivtpppsfialvaldlastsdrasverllrvwtvdierlttgr
pgladsepelalvpaaltvtvgfgpglltaaglrhrapawlhplppfgidrldpawcdgd
vvlqvcaddrttlahavrvltkeaqglasvrwvqrgfrrspgisepdgtsmrnlmgqveg
tanldprtdpdllwhrdgepgwltggtsmvvrriamnldtwdelsrgareatigrtlrtg
apltgraehdepdlealddhgrpvidleahirrarptqreetflrraynydeapppgras
dsgllfvtyqrdvdaqftpvqrrldaadllnewtfpvgsavfavpggwsageyvgqrlle
g

  • Chain 'F':
    Sequence, based on SEQRES records:
    >6qzoF (F:)
mgagagarwgsrapeapqparaagpgdvvvpchgehqagivtpppsfialvaldlastsd
rasverllrvwtvdierlttgrpgladsepelalvpaaltvtvgfgpglltaaglrhrap
awlhplppfgidrldpawcdgdvvlqvcaddrttlahavrvltkeaqglasvrwvqrgfr
rspgisepdgtsmrnlmgqvegtanldprtdpdllwhrdgepgwltggtsmvvrriamnl
dtwdelsrgareatigrtlrtgapltgraehdepdlealddhgrpvidleahirrarptq
reetflrraynydeapppgrasdsgllfvtyqrdvdaqftpvqrrldaadllnewtfpvg
savfavpggwsageyvgqrlleg

    Sequence, based on observed residues (ATOM records):
    >6qzoF (F:)
agpgdvvvpchgehqagivtpppsfialvaldlastsdrasverllrvwtvdierlttgr
pgladsepelalvpaaltvtvgfgpglltaaglrhrapawlhplppfgidrldpawcdgd
vvlqvcaddrttlahavrvltkeaqglasvrwvqrgfrrspgisepdgtsmrnlmgqveg
tanldprtdpdllwhrdgepgwltggtsmvvrriamnldtwdelsrgareatigrtlrtg
apltgraehdepdlealddhgrpvidleahirrarptqreetflrraynydeapppgras
dsgllfvtyqrdvdaqftpvqrrldaadllnewtfpvgsavfavpggwsageyvgqrlle
g

  • Chain 'G':
    Sequence, based on SEQRES records:
    >6qzoG (G:)
mgagagarwgsrapeapqparaagpgdvvvpchgehqagivtpppsfialvaldlastsd
rasverllrvwtvdierlttgrpgladsepelalvpaaltvtvgfgpglltaaglrhrap
awlhplppfgidrldpawcdgdvvlqvcaddrttlahavrvltkeaqglasvrwvqrgfr
rspgisepdgtsmrnlmgqvegtanldprtdpdllwhrdgepgwltggtsmvvrriamnl
dtwdelsrgareatigrtlrtgapltgraehdepdlealddhgrpvidleahirrarptq
reetflrraynydeapppgrasdsgllfvtyqrdvdaqftpvqrrldaadllnewtfpvg
savfavpggwsageyvgqrlleg

    Sequence, based on observed residues (ATOM records):
    >6qzoG (G:)
agpgdvvvpchgehqagivtpppsfialvaldlastsdrasverllrvwtvdierlttgr
pgladsepelalvpaaltvtvgfgpglltaaglrhrapawlhplppfgidrldpawcdgd
vvlqvcaddrttlahavrvltkeaqglasvrwvqrgfrrspgisepdgtsmrnlmgqveg
tanldprtdpdllwhrdgepgwltggtsmvvrriamnldtwdelsrgareatigrtlrtg
apltgraehdepdlealddhgrpvidleahirrarptqreetflrraynydeapppgras
dsgllfvtyqrdvdaqftpvqrrldaadllnewtfpvgsavfavpggwsageyvgqrlle
g

  • Chain 'H':
    Sequence, based on SEQRES records:
    >6qzoH (H:)
mgagagarwgsrapeapqparaagpgdvvvpchgehqagivtpppsfialvaldlastsd
rasverllrvwtvdierlttgrpgladsepelalvpaaltvtvgfgpglltaaglrhrap
awlhplppfgidrldpawcdgdvvlqvcaddrttlahavrvltkeaqglasvrwvqrgfr
rspgisepdgtsmrnlmgqvegtanldprtdpdllwhrdgepgwltggtsmvvrriamnl
dtwdelsrgareatigrtlrtgapltgraehdepdlealddhgrpvidleahirrarptq
reetflrraynydeapppgrasdsgllfvtyqrdvdaqftpvqrrldaadllnewtfpvg
savfavpggwsageyvgqrlleg

    Sequence, based on observed residues (ATOM records):
    >6qzoH (H:)
agpgdvvvpchgehqagivtpppsfialvaldlastsdrasverllrvwtvdierlttgr
pgladsepelalvpaaltvtvgfgpglltaaglrhrapawlhplppfgidrldpawcdgd
vvlqvcaddrttlahavrvltkeaqglasvrwvqrgfrrspgisepdgtsmrnlmgqveg
tanldprtdpdllwhrdgepgwltggtsmvvrriamnldtwdelsrgareatigrtlrtg
apltgraehdepdlealddhgrpvidleahirrarptqreetflrraynydeapppgras
dsgllfvtyqrdvdaqftpvqrrldaadllnewtfpvgsavfavpggwsageyvgqrlle
g