PDB entry 6qzk

View 6qzk on RCSB PDB site
Description: structure of clostridium butyricum argonaute bound to a guide dna (5' deoxycytidine) and a 19-mer target dna
Deposited on 2019-03-11, released 2019-04-24
The last revision was dated 2019-06-26, with a file datestamp of 2019-06-21.
Experiment type: XRAY
Resolution: 3.55 Å
R-factor: N/A
AEROSPACI score: 0.08 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Clostridium butyricum Argonaute
    Species: Clostridium butyricum [TaxId:1492]
    Database cross-references and differences (RAF-indexed):
    • PDB 6QZK (0-747)
  • Chain 'B':
    Compound: siDNA guide (5'-D(P*CP*GP*AP*GP*GP*TP*AP*GP*TP*AP*GP*GP*TP*TP*GP*TP*AP*TP*AP*GP*T)-3')
    Species: synthetic construct, synthetic [TaxId:32630]
  • Chain 'C':
    Compound: DNA target (5'-D(T*AP*TP*AP*CP*AP*AP*CP*CP*TP*AP*CP*TP*AP*CP*CP*TP*CP*T)-3')
    Species: synthetic construct, synthetic [TaxId:32630]
  • Heterogens: MG, FMT, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6qzkA (A:)
annltfeafegigqlnelnfykyrligkgqidnvhqaiwsvkyklqannffkpvfvkgei
lysldelkvipefenvevildgniilsisentdiykdvivfyinnalknikditnyrkyi
tkntdeiicksilttnlkyqymksekgfklqrkfkispvvfrngkvilylncssdfstdk
siyemlndglgvvglqvknkwtnangnifiekvldntisdpgtsgklgqslidyyingnq
kyrvekftdedknakviqakiknktynyipqaltpvitreylshtdkkfskqienvikmd
mnyryqtlksfvedigvikelnnlhfknqyytnfdfmgfesgvleepvlmgangkikdkk
qifingffknpkenvkfgvlypegcmenaqsiarsildfatagkynkqenkyisknlmni
gfkpsecifesyklgditeykatarklkehekvgfviavipdmnelevenpynpfkkvwa
klnipsqmitlkttekfknivdksglyylhnialnilgkiggipwiikdmpgnidcfigl
avgtrekgihfpacsvlfdkygklinyykptipqsgekiaetilqeifdnvlisykeeng
eypknivihragfsrenidwykeyfdkkgikfniievkknipvkiakvvgsnicnpikgs
yvlkndkafivttdikdgvaspnplkiektygdvemksileqiyslsqihvgstkslrlp
ittgyadkickaieyipqgvvdnrlffl

    Sequence, based on observed residues (ATOM records):
    >6qzkA (A:)
annltfeafegigqlnelnfykyrligkgqidnvhqaiwsvkyklqannffkpvfvkgei
lysldelkvipefenvevildgniilsisentdiykdvivfyinnalknikditnyrkyi
tkntdeiicksilttnlkyqymksekgfklqrkfkispvvfrngkvilylncssdfstdk
siyemlndglgvvglqvknkwtnangnifiekvldntisdpgtsgklgqslidyyingnq
kyrvekftdedknakviqakiknktynyipqaltpvitreylshtdkkfskqienvikmd
mnyryqtlksfvedigvikelnnlhfknqyytnfdfmgfesgvleepvlmgangkikdkk
qifingffknpkenvkfgvlypegcmenaqsiarsildfatagkynkqenkyisknlmni
gfkpsecifesyklgditeykatarklkehekvgfviavipdmlevenpynpfkkvwakl
nipsqmitlkttekfknivdksglyylhnialnilgkiggipwiikdmpgnidcfiglav
gtrekgihfpacsvlfdkygklinyykptipqsgekiaetilqeifdnvlisykeengey
pknivihragfsrenidwykeyfdkkgikfniievkknipvkiakvvgsnicnpikgsyv
lkndkafivttdikdgvaspnplkiektygdvemksileqiyslsqihvgstkslrlpit
tgyadkickaieyipqgvvdnrlffl

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    No sequence available.