PDB entry 6qul

View 6qul on RCSB PDB site
Description: structure of a bacterial 50s ribosomal subunit in complex with the novel quinoxolidinone antibiotic cadazolid
Deposited on 2019-02-27, released 2019-04-10
The last revision was dated 2019-12-18, with a file datestamp of 2019-12-13.
Experiment type: EM
Resolution: 3 Å
R-factor: N/A
AEROSPACI score: 0.14 (click here for full SPACI score report)

Chains and heterogens:

  • Chain '1':
    Compound: P-site fMet-tRNA(fMet)
    Species: Escherichia coli [TaxId:562]
  • Chain 'A':
    Compound: 23s rRNA
    Species: Escherichia coli [TaxId:562]
  • Chain 'B':
    Compound: 5s rRNA
    Species: Escherichia coli [TaxId:562]
  • Chain 'C':
    Compound: 50S ribosomal protein L2
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: 50S ribosomal protein L3
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: 50S ribosomal protein L4
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: 50S ribosomal protein L5
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: 50S ribosomal protein L6
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: 50S ribosomal protein L9
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
  • Chain 'K':
    Compound: 50S ribosomal protein L13
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
  • Chain 'L':
    Compound: 50S ribosomal protein L14
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
  • Chain 'M':
    Compound: 50S ribosomal protein L15
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
  • Chain 'N':
    Compound: 50S ribosomal protein L16
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
  • Chain 'O':
    Compound: 50S ribosomal protein L17
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
  • Chain 'P':
    Compound: 50S ribosomal protein L18
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
  • Chain 'Q':
    Compound: 50S ribosomal protein L19
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
  • Chain 'R':
    Compound: 50S ribosomal protein L20
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
  • Chain 'S':
    Compound: 50S ribosomal protein L21
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
  • Chain 'T':
    Compound: 50S ribosomal protein L22
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
  • Chain 'U':
    Compound: 50S ribosomal protein L23
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
  • Chain 'V':
    Compound: 50S ribosomal protein L24
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
  • Chain 'W':
    Compound: 50S ribosomal protein L25
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
  • Chain 'X':
    Compound: 50S ribosomal protein L27
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
  • Chain 'Y':
    Compound: 50S ribosomal protein L28
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
  • Chain 'Z':
    Compound: 50S ribosomal protein L29
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
  • Chain 'a':
    Compound: 50S ribosomal protein L30
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
  • Chain 'b':
    Compound: 50S ribosomal protein L32
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
  • Chain 'c':
    Compound: 50S ribosomal protein L33
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
  • Chain 'd':
    Compound: 50S ribosomal protein L34
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
  • Chain 'e':
    Compound: 50S ribosomal protein L35
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
  • Chain 'f':
    Compound: 50S ribosomal protein L36
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: JJH, FME, MG, A, ZN

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain '1':
    No sequence available.

  • Chain 'A':
    No sequence available.

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6qulC (C:)
    mavvkckptspgrrhvvkvvnpelhkgkpfaplleknsksggrnnngrittrhiggghkq
    ayrivdfkrnkdgipavverleydpnrsanialvlykdgerryilapkglkagdqiqsgv
    daaikpgntlpmrnipvgstvhnvemkpgkggqlarsagtyvqivardgayvtlrlrsge
    mrkveadcratlgevgnaehmlrvlgkagaarwrgvrptvrgtamnpvdhphgggegrnf
    gkhpvtpwgvqtkgkktrsnkrtdkfivrrrsk
    

    Sequence, based on observed residues (ATOM records):
    >6qulC (C:)
    avvkckptspgrrhvvkvvnpelhkgkpfaplleknsksggrnnngrittrhiggghkqa
    yrivdfkrnkdgipavverleydpnrsanialvlykdgerryilapkglkagdqiqsgvd
    aaikpgntlpmrnipvgstvhnvemkpgkggqlarsagtyvqivardgayvtlrlrsgem
    rkveadcratlgevgnaehmlrvlgkagaarwrgvrptvrgtamnpvdhphgggegrnfg
    khpvtpwgvqtkgkktrsnkrtdkfivrrrs
    

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records:
    >6qulD (D:)
    miglvgkkvgmtriftedgvsipvtvieveanrvtqvkdlandgyraiqvttgakkanrv
    tkpeaghfakagveagrglwefrlaegeeftvgqsisvelfadvkkvdvtgtskgkgfag
    tvkrwnfrtqdathgnslshrvpgsigqnqtpgkvfkgkkmagqmgnervtvqsldvvrv
    daernlllvkgavpgatgsdlivkpavka
    

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records:
    >6qulE (E:)
    melvlkdaqsaltvsettfgrdfnealvhqvvvayaagarqgtraqktraevtgsgkkpw
    rqkgtgrarsgsikspiwrsggvtfaarpqdhsqkvnkkmyrgalksilselvrqdrliv
    vekfsveapktkllaqklkdmaledvliitgeldenlflaarnlhkvdvrdatgidpvsl
    iafdkvvmtadavkqveemla
    

  • Chain 'F':
    Sequence, based on SEQRES records:
    >6qulF (F:)
    maklhdyykdevvkklmtefnynsvmqvprvekitlnmgvgeaiadkklldnaaadlaai
    sgqkplitkarksvagfkirqgypigckvtlrgermwefferlitiavprirdfrglsak
    sfdgrgnysmgvreqiifpeidydkvdrvrgldititttaksdeegrallaafdfpfrk
    

    Sequence, based on observed residues (ATOM records):
    >6qulF (F:)
    aklhdyykdevvkklmtefnynsvmqvprvekitlnmgvgeaiadkklldnaaadlaais
    gqkplitkarksvagfkirqgypigckvtlrgermwefferlitiavprirdfrglsaks
    fdgrgnysmgvreqiifpeidydkvdrvrgldititttaksdeegrallaafdfpfr
    

  • Chain 'G':
    Sequence, based on SEQRES records:
    >6qulG (G:)
    msrvakapvvvpagvdvkingqvitikgkngeltrtlndavevkhadntltfgprdgyad
    gwaqagtarallnsmvigvtegftkklqlvgvgyraavkgnvinlslgfshpvdhqlpag
    itaecptqteivlkgadkqvigqvaadlrayrrpepykgkgvryadevvrtkeakkk
    

    Sequence, based on observed residues (ATOM records):
    >6qulG (G:)
    srvakapvvvpagvdvkingqvitikgkngeltrtlndavevkhadntltfgprdgyadg
    waqagtarallnsmvigvtegftkklqlvgvgyraavkgnvinlslgfshpvdhqlpagi
    taecptqteivlkgadkqvigqvaadlrayrrpepykgkgvryadevvrtkeakkk
    

  • Chain 'H':
    Sequence, based on SEQRES records:
    >6qulH (H:)
    mqvilldkvanlgslgdqvnvkagyarnflvpqgkavpatkknieffearraeleaklae
    vlaaanaraekinaletvtiaskagdegklfgsigtrdiadavtaagvevaksevrlpng
    vlrttgehevsfqvhsevfakvivnvvae
    

    Sequence, based on observed residues (ATOM records):
    >6qulH (H:)
    mqvilldkvanlgslgdqvnvkagyarnflvpqgkavpatkknieffear
    

  • Chain 'K':
    Sequence; same for both SEQRES and ATOM records:
    >6qulK (K:)
    mktftakpetvkrdwyvvdatgktlgrlatelarrlrgkhkaeytphvdtgdyiivlnad
    kvavtgnkrtdkvyyhhtghiggikqatfeemiarrpervieiavkgmlpkgplgramfr
    klkvyagnehnhaaqqpqvldi
    

  • Chain 'L':
    Sequence; same for both SEQRES and ATOM records:
    >6qulL (L:)
    miqeqtmlnvadnsgarrvmcikvlggshrryagvgdiikitikeaiprgkvkkgdvlka
    vvvrtkkgvrrpdgsvirfdgnacvllnnnseqpigtrifgpvtrelrsekfmkiislap
    evl
    

  • Chain 'M':
    Sequence; same for both SEQRES and ATOM records:
    >6qulM (M:)
    mrlntlspaegskkagkrlgrgigsglgktggrghkgqksrsgggvrrgfeggqmplyrr
    lpkfgftsrkaaitaeirlsdlakveggvvdlntlkaaniigiqiefakvilagevttpv
    tvrglrvtkgaraaieaaggkiee
    

  • Chain 'N':
    Sequence; same for both SEQRES and ATOM records:
    >6qulN (N:)
    mlqpkrtkfrkmhkgrnrglaqgtdvsfgsfglkavgrgrltarqieaarramtravkrq
    gkiwirvfpdkpitekplavrmgkgkgnveywvaliqpgkvlyemdgvpeelareafkla
    aaklpikttfvtktvm
    

  • Chain 'O':
    Sequence, based on SEQRES records:
    >6qulO (O:)
    mrhrksgrqlnrnsshrqamfrnmagslvrheiikttlpkakelrrvveplitlaktdsv
    anrrlafartrdneivaklfnelgprfasraggytrilkcgfragdnapmayielvdrse
    kaeaaae
    

    Sequence, based on observed residues (ATOM records):
    >6qulO (O:)
    mrhrksgrqlnrnsshrqamfrnmagslvrheiikttlpkakelrrvveplitlaktdsv
    anrrlafartrdneivaklfnelgprfasraggytrilkcgfragdnapmayielvdrse
    kaeaa
    

  • Chain 'P':
    Sequence; same for both SEQRES and ATOM records:
    >6qulP (P:)
    mdkksarirratrarrklqelgatrlvvhrtprhiyaqviapngsevlvaastvekaiae
    qlkytgnkdaaaavgkavaeralekgikdvsfdrsgfqyhgrvqaladaareaglqf
    

  • Chain 'Q':
    Sequence, based on SEQRES records:
    >6qulQ (Q:)
    msniikqleqeqmkqdvpsfrpgdtvevkvwvvegskkrlqafegvviairnrglhsaft
    vrkisngegvervfqthspvvdsisvkrrgavrkaklyylrertgkaarikerln
    

    Sequence, based on observed residues (ATOM records):
    >6qulQ (Q:)
    sniikqleqeqmkqdvpsfrpgdtvevkvwvvegskkrlqafegvviairnrglhsaftv
    rkisngegvervfqthspvvdsisvkrrgavrkaklyylrertgkaarikerln
    

  • Chain 'R':
    Sequence, based on SEQRES records:
    >6qulR (R:)
    marvkrgviararhkkilkqakgyygarsrvyrvafqavikagqyayrdrrqrkrqfrql
    wiarinaaarqngisyskfinglkkasveidrkiladiavfdkvaftalvekakaala
    

    Sequence, based on observed residues (ATOM records):
    >6qulR (R:)
    arvkrgviararhkkilkqakgyygarsrvyrvafqavikagqyayrdrrqrkrqfrqlw
    iarinaaarqngisyskfinglkkasveidrkiladiavfdkvaftalvekakaala
    

  • Chain 'S':
    Sequence; same for both SEQRES and ATOM records:
    >6qulS (S:)
    myavfqsggkqhrvsegqtvrlekldiatgetvefaevlmiangeevkigvpfvdggvik
    aevvahgrgekvkivkfrrrkhyrkqqghrqwftdvkitgisa
    

  • Chain 'T':
    Sequence; same for both SEQRES and ATOM records:
    >6qulT (T:)
    metiakhrharssaqkvrlvadlirgkkvsqaldiltytnkkaavlvkkvlesaianaeh
    ndgadiddlkvtkifvdegpsmkrimprakgradrilkrtshitvvvsdr
    

  • Chain 'U':
    Sequence, based on SEQRES records:
    >6qulU (U:)
    mireerllkvlraphvsekastameksntivlkvakdatkaeikaavqklfevevevvnt
    lvvkgkvkrhgqrigrrsdwkkayvtlkegqnldfvggae
    

    Sequence, based on observed residues (ATOM records):
    >6qulU (U:)
    ireerllkvlraphvsekastameksntivlkvakdatkaeikaavqklfevevevvntl
    vvkgkvkrhgqrigrrsdwkkayvtlkegqnldfv
    

  • Chain 'V':
    Sequence, based on SEQRES records:
    >6qulV (V:)
    maakirrddevivltgkdkgkrgkvknvlssgkviveginlvkkhqkpvpalnqpggive
    keaaiqvsnvaifnaatgkadrvgfrfedgkkvrffksnsetik
    

    Sequence, based on observed residues (ATOM records):
    >6qulV (V:)
    aakirrddevivltgkdkgkrgkvknvlssgkviveginlvkkhqkpvpalnqpggivek
    eaaiqvsnvaifnaatgkadrvgfrfedgkkvrffksnseti
    

  • Chain 'W':
    Sequence; same for both SEQRES and ATOM records:
    >6qulW (W:)
    mftinaevrkeqgkgasrrlraankfpaiiyggkeaplaieldhdkvmnmqakaefysev
    ltivvdgkeikvkaqdvqrhpykpklqhidfvra
    

  • Chain 'X':
    Sequence, based on SEQRES records:
    >6qulX (X:)
    mahkkaggstrngrdseakrlgvkrfggesvlagsiivrqrgtkfhaganvgcgrdhtlf
    akadgkvkfevkgpknrkfisieae
    

    Sequence, based on observed residues (ATOM records):
    >6qulX (X:)
    trngrdseakrlgvkrfggesvlagsiivrqrgtkfhaganvgcgrdhtlfakadgkvkf
    evkgpknrkfisieae
    

  • Chain 'Y':
    Sequence, based on SEQRES records:
    >6qulY (Y:)
    msrvcqvtgkrpvtgnnrshalnatkrrflpnlhshrfwvesekrfvtlrvsakgmrvid
    kkgidtvlaelrargeky
    

    Sequence, based on observed residues (ATOM records):
    >6qulY (Y:)
    srvcqvtgkrpvtgnnrshalnatkrrflpnlhshrfwvesekrfvtlrvsakgmrvidk
    kgidtvlaelrargeky
    

  • Chain 'Z':
    Sequence, based on SEQRES records:
    >6qulZ (Z:)
    mkakelreksveelntellnllreqfnlrmqaasgqlqqshllkqvrrdvarvktllnek
    aga
    

    Sequence, based on observed residues (ATOM records):
    >6qulZ (Z:)
    kakelreksveelntellnllreqfnlrmqaasgqlqqshllkqvrrdvarvktllneka
    ga
    

  • Chain 'a':
    Sequence, based on SEQRES records:
    >6qula (a:)
    maktikitqtrsaigrlpkhkatllglglrrightveredtpairgminavsfmvkvee
    

    Sequence, based on observed residues (ATOM records):
    >6qula (a:)
    aktikitqtrsaigrlpkhkatllglglrrightveredtpairgminavsfmvkvee
    

  • Chain 'b':
    Sequence, based on SEQRES records:
    >6qulb (b:)
    mavqqnkptrskrgmrrshdaltavtslsvdktsgekhlrhhitadgyyrgrkviak
    

    Sequence, based on observed residues (ATOM records):
    >6qulb (b:)
    avqqnkptrskrgmrrshdaltavtslsvdktsgekhlrhhitadgyyrgrkviak
    

  • Chain 'c':
    Sequence, based on SEQRES records:
    >6qulc (c:)
    makgirekiklvssagtghfytttknkrtkpeklelkkfdpvvrqhviykeakik
    

    Sequence, based on observed residues (ATOM records):
    >6qulc (c:)
    girekiklvssagtghfytttknkrtkpeklelkkfdpvvrqhviykeaki
    

  • Chain 'd':
    Sequence; same for both SEQRES and ATOM records:
    >6quld (d:)
    mkrtfqpsvlkrnrshgfrarmatkngrqvlarrrakgrarltvsk
    

  • Chain 'e':
    Sequence, based on SEQRES records:
    >6qule (e:)
    mpkiktvrgaakrfkktgkggfkhkhanlrhiltkkatkrkrhlrpkamvskgdlglvia
    clpya
    

    Sequence, based on observed residues (ATOM records):
    >6qule (e:)
    pkiktvrgaakrfkktgkggfkhkhanlrhiltkkatkrkrhlrpkamvskgdlglviac
    lpya
    

  • Chain 'f':
    Sequence; same for both SEQRES and ATOM records:
    >6qulf (f:)
    mkvrasvkklcrnckivkrdgvirvicsaepkhkqrqg