PDB entry 6qub

View 6qub on RCSB PDB site
Description: truncated beta-galactosidase iii from bifidobacterium bifidum in complex with galactose
Deposited on 2019-02-27, released 2020-03-18
The last revision was dated 2020-07-29, with a file datestamp of 2020-06-29.
Experiment type: XRAY
Resolution: 1.95 Å
R-factor: N/A
AEROSPACI score: 0.41 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: beta-galactosidase
    Species: Bifidobacterium bifidum [TaxId:1681]
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: beta-galactosidase
    Species: Bifidobacterium bifidum [TaxId:1681]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: GAL, CA, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6qubA (A:)
vedatrsdsttqmsstpevvyssavdskqnrtsdfdanwkfmlsdsvqaqdpafddsawq
qvdlphdysitqkysqsneaesaylpggtgwyrksftidrdlagkriainfdgvymnatv
wfngvklgthpygyspfsfdltgnakfggentivvkvenrlpssrwysgsgiyrdvtltv
tdgvhvgnngvaiktpslatqnggdvtmnlttkvandteaaanitlkqtvfpkggktdaa
igtvttasksiaagasadvtstitaaspklwsiknpnlytvrtevlnggkvldtydteyg
frwtgfdatsgfslngekvklkgvsmhhdqgslgavanrraierqveilqkmgvnsirtt
hnpaakalidvcnekgvlvveevfdmwnrskngntedygkwfgqaiagdnavlggdkdet
wakfdltstinrdrnapsvimwslgnemmegisgsvsgfpatsaklvawtkaadstrpmt
ygdnkikanwnesntmgdnltanggvvgtnysdganydkirtthpswaiygsetasains
rgiynrttggaqssdkqltsydnsavgwgavassawydvvqrdfvagtyvwtgfdylgep
tpwngtgsgavgswpspknsyfgivdtagfpkdtyyfyqsqwnddvhtlhilpawnenvv
akgsgnnvpvvvytdaakvklyftpkgstekrligeksftkkttaagytyqvyegsdkds
tahknmyltwnvpwaegtisaeaydennrlipegstegnasvtttgkaaklkadadrkti
tadgkdlsyievdvtdanghivpdaanrvtfdvkgagklvgvdngsspdhdsyqadnrka
fsgkvlaivqstkeageitvtakadglqsstvkiattavpgtste

    Sequence, based on observed residues (ATOM records):
    >6qubA (A:)
avdskqnrtsdfdanwkfmlsdsvqaqdpafddsawqqvdlphdysitqkysqsneaesa
ylpggtgwyrksftidrdlagkriainfdgvymnatvwfngvklgthpygyspfsfdltg
nakfggentivvkvenrlpssrwysgsgiyrdvtltvtdgvhvgnngvaiktpslatqng
gdvtmnlttkvandteaaanitlkqtvfpkggktdaaigtvttasksiaagasadvtsti
taaspklwsiknpnlytvrtevlnggkvldtydteygfrwtgfdatsgfslngekvklkg
vsmhhdqgslgavanrraierqveilqkmgvnsirtthnpaakalidvcnekgvlvveev
fdmwnrskngntedygkwfgqaiagdnavlggdkdetwakfdltstinrdrnapsvimws
lgnemmegisgsvsgfpatsaklvawtkaadstrpmtygdnkikanwnesntmgdnltan
ggvvgtnysdganydkirtthpswaiygsetasainsrgiynrttggaqssdkqltsydn
savgwgavassawydvvqrdfvagtyvwtgfdylgeptpwngtgsgavgswpspknsyfg
ivdtagfpkdtyyfyqsqwnddvhtlhilpawnenvvakgsgnnvpvvvytdaakvklyf
tpkgstekrligeksftkkttaagytyqvyegsdkdstahknmyltwnvpwaegtisaea
ydennrlipegstegnasvtttgkaaklkadadrktitadgkdlsyievdvtdanghivp
daanrvtfdvkgagklvgvdngsspdhdsyqadnrkafsgkvlaivqstkeageitvtak
adglqsstvkiattavp

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records:
    >6qubB (B:)
avdskqnrtsdfdanwkfmlsdsvqaqdpafddsawqqvdlphdysitqkysqsneaesa
ylpggtgwyrksftidrdlagkriainfdgvymnatvwfngvklgthpygyspfsfdltg
nakfggentivvkvenrlpssrwysgsgiyrdvtltvtdgvhvgnngvaiktpslatqng
gdvtmnlttkvandteaaanitlkqtvfpkggktdaaigtvttasksiaagasadvtsti
taaspklwsiknpnlytvrtevlnggkvldtydteygfrwtgfdatsgfslngekvklkg
vsmhhdqgslgavanrraierqveilqkmgvnsirtthnpaakalidvcnekgvlvveev
fdmwnrskngntedygkwfgqaiagdnavlggdkdetwakfdltstinrdrnapsvimws
lgnemmegisgsvsgfpatsaklvawtkaadstrpmtygdnkikanwnesntmgdnltan
ggvvgtnysdganydkirtthpswaiygsetasainsrgiynrttggaqssdkqltsydn
savgwgavassawydvvqrdfvagtyvwtgfdylgeptpwngtgsgavgswpspknsyfg
ivdtagfpkdtyyfyqsqwnddvhtlhilpawnenvvakgsgnnvpvvvytdaakvklyf
tpkgstekrligeksftkkttaagytyqvyegsdkdstahknmyltwnvpwaegtisaea
ydennrlipegstegnasvtttgkaaklkadadrktitadgkdlsyievdvtdanghivp
daanrvtfdvkgagklvgvdngsspdhdsyqadnrkafsgkvlaivqstkeageitvtak
adglqsstvkiattavp