PDB entry 6qoz

View 6qoz on RCSB PDB site
Description: cryoem reconstruction of cowpea mosaic virus (cpmv) bound to an affimer reagent
Deposited on 2019-02-13, released 2019-12-18
The last revision was dated 2019-12-18, with a file datestamp of 2019-12-13.
Experiment type: EM
Resolution: 3.4 Å
R-factor: N/A
AEROSPACI score: 0.09 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: rna2 polyprotein
    Species: Cowpea mosaic virus [TaxId:12264]
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Cowpea mosaic virus large subunit
    Species: Cowpea mosaic virus [TaxId:12264]
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Affimer binding protein
    Species: synthetic construct, synthetic [TaxId:32630]
    Database cross-references and differences (RAF-indexed):
    • PDB 6QOZ (0-78)
  • Chain 'D':
    Compound: rna2 polyprotein
    Species: Cowpea mosaic virus [TaxId:12264]
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: Cowpea mosaic virus large subunit
    Species: Cowpea mosaic virus [TaxId:12264]
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: rna2 polyprotein
    Species: Cowpea mosaic virus [TaxId:12264]
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: Cowpea mosaic virus large subunit
    Species: Cowpea mosaic virus [TaxId:12264]
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: rna2 polyprotein
    Species: Cowpea mosaic virus [TaxId:12264]
    Database cross-references and differences (RAF-indexed):
  • Chain 'I':
    Compound: Cowpea mosaic virus large subunit
    Species: Cowpea mosaic virus [TaxId:12264]
    Database cross-references and differences (RAF-indexed):

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records:
    >6qozA (A:)
gpvcaeasdvyspcmiastppapfsdvtavtfdlingkitpvgddnwnthiynppimnvl
rtaawksgtihvqlnvrgagvkradwdgqvfvylrqsmnpesydartfvisqpgsamlnf
sfdiigpnsgfefaespwanqttwylecvatnprqiqqfevnmrfdpnfrvagnilmppf
plstetppl

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6qozB (B:)
meqnlfalslddtssvrgslldtkfaqtrvllskamaggdvlldeylydvvngqdfratv
aflrthvitgkikvtattnisdnsgcclmlainsgvrgkystdvyticsqdsmtwnpgck
knfsftfnpnpcgdswsaemisrsrvrmtvicvsgwtlspttdviakldwsivnekcept
iyhladcqnwlplnrwmgkltfpqgvtsevrrmplsigggagatqaflanmpnswismwr
yfrgelhfevtkmsspyikatvtfliafgnlsdafgfyesfphrivqfaeveekctlvfs
qqefvtawstqvnprttleadgcpylyaiihdsttgtisgdfnlgvklvgikdfcgigsn
pgidgsrll

    Sequence, based on observed residues (ATOM records):
    >6qozB (B:)
meqnlfalslddtssvrgslldtkfaqtrvllskamaggdvlldeylydvvngqdfratv
aflrthvitgkikvtattnisdnsgcclmlainsgvrgkystdvyticsqdsmtwnpgck
knfsftfnpnpcgdswsaemisrsrvrmtvicvsgwtlspttdviakldwsivnekcept
iyhladcqnwlplnrwmgkltfpqgvtsevrrmplsigggagatqaflanmpnswismwr
yfrgelhfevtkmsspyikatvtfliafgnlsdafgfyesfphrivqfaeveekctlvfs
qqefvtawstqvnprttleadgcpylyaiihdsttgtisgdfnlgvklvgikdfcgigsn
pgidgsrl

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records:
    >6qozC (C:)
ensleieelarfavdehnkkenallefvrvvkakeqvvagtmyyltleakdggkkklyea
kvwvkpwenfkelqefkpv

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records:
    >6qozD (D:)
gpvcaeasdvyspcmiastppapfsdvtavtfdlingkitpvgddnwnthiynppimnvl
rtaawksgtihvqlnvrgagvkradwdgqvfvylrqsmnpesydartfvisqpgsamlnf
sfdiigpnsgfefaespwanqttwylecvatnprqiqqfevnmrfdpnfrvagnilmppf
plstetppl

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6qozE (E:)
meqnlfalslddtssvrgslldtkfaqtrvllskamaggdvlldeylydvvngqdfratv
aflrthvitgkikvtattnisdnsgcclmlainsgvrgkystdvyticsqdsmtwnpgck
knfsftfnpnpcgdswsaemisrsrvrmtvicvsgwtlspttdviakldwsivnekcept
iyhladcqnwlplnrwmgkltfpqgvtsevrrmplsigggagatqaflanmpnswismwr
yfrgelhfevtkmsspyikatvtfliafgnlsdafgfyesfphrivqfaeveekctlvfs
qqefvtawstqvnprttleadgcpylyaiihdsttgtisgdfnlgvklvgikdfcgigsn
pgidgsrll

    Sequence, based on observed residues (ATOM records):
    >6qozE (E:)
meqnlfalslddtssvrgslldtkfaqtrvllskamaggdvlldeylydvvngqdfratv
aflrthvitgkikvtattnisdnsgcclmlainsgvrgkystdvyticsqdsmtwnpgck
knfsftfnpnpcgdswsaemisrsrvrmtvicvsgwtlspttdviakldwsivnekcept
iyhladcqnwlplnrwmgkltfpqgvtsevrrmplsigggagatqaflanmpnswismwr
yfrgelhfevtkmsspyikatvtfliafgnlsdafgfyesfphrivqfaeveekctlvfs
qqefvtawstqvnprttleadgcpylyaiihdsttgtisgdfnlgvklvgikdfcgigsn
pgidgsrl

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records:
    >6qozF (F:)
gpvcaeasdvyspcmiastppapfsdvtavtfdlingkitpvgddnwnthiynppimnvl
rtaawksgtihvqlnvrgagvkradwdgqvfvylrqsmnpesydartfvisqpgsamlnf
sfdiigpnsgfefaespwanqttwylecvatnprqiqqfevnmrfdpnfrvagnilmppf
plstetppl

  • Chain 'G':
    Sequence, based on SEQRES records:
    >6qozG (G:)
meqnlfalslddtssvrgslldtkfaqtrvllskamaggdvlldeylydvvngqdfratv
aflrthvitgkikvtattnisdnsgcclmlainsgvrgkystdvyticsqdsmtwnpgck
knfsftfnpnpcgdswsaemisrsrvrmtvicvsgwtlspttdviakldwsivnekcept
iyhladcqnwlplnrwmgkltfpqgvtsevrrmplsigggagatqaflanmpnswismwr
yfrgelhfevtkmsspyikatvtfliafgnlsdafgfyesfphrivqfaeveekctlvfs
qqefvtawstqvnprttleadgcpylyaiihdsttgtisgdfnlgvklvgikdfcgigsn
pgidgsrll

    Sequence, based on observed residues (ATOM records):
    >6qozG (G:)
meqnlfalslddtssvrgslldtkfaqtrvllskamaggdvlldeylydvvngqdfratv
aflrthvitgkikvtattnisdnsgcclmlainsgvrgkystdvyticsqdsmtwnpgck
knfsftfnpnpcgdswsaemisrsrvrmtvicvsgwtlspttdviakldwsivnekcept
iyhladcqnwlplnrwmgkltfpqgvtsevrrmplsigggagatqaflanmpnswismwr
yfrgelhfevtkmsspyikatvtfliafgnlsdafgfyesfphrivqfaeveekctlvfs
qqefvtawstqvnprttleadgcpylyaiihdsttgtisgdfnlgvklvgikdfcgigsn
pgidgsrl

  • Chain 'H':
    Sequence; same for both SEQRES and ATOM records:
    >6qozH (H:)
gpvcaeasdvyspcmiastppapfsdvtavtfdlingkitpvgddnwnthiynppimnvl
rtaawksgtihvqlnvrgagvkradwdgqvfvylrqsmnpesydartfvisqpgsamlnf
sfdiigpnsgfefaespwanqttwylecvatnprqiqqfevnmrfdpnfrvagnilmppf
plstetppl

  • Chain 'I':
    Sequence, based on SEQRES records:
    >6qozI (I:)
meqnlfalslddtssvrgslldtkfaqtrvllskamaggdvlldeylydvvngqdfratv
aflrthvitgkikvtattnisdnsgcclmlainsgvrgkystdvyticsqdsmtwnpgck
knfsftfnpnpcgdswsaemisrsrvrmtvicvsgwtlspttdviakldwsivnekcept
iyhladcqnwlplnrwmgkltfpqgvtsevrrmplsigggagatqaflanmpnswismwr
yfrgelhfevtkmsspyikatvtfliafgnlsdafgfyesfphrivqfaeveekctlvfs
qqefvtawstqvnprttleadgcpylyaiihdsttgtisgdfnlgvklvgikdfcgigsn
pgidgsrll

    Sequence, based on observed residues (ATOM records):
    >6qozI (I:)
meqnlfalslddtssvrgslldtkfaqtrvllskamaggdvlldeylydvvngqdfratv
aflrthvitgkikvtattnisdnsgcclmlainsgvrgkystdvyticsqdsmtwnpgck
knfsftfnpnpcgdswsaemisrsrvrmtvicvsgwtlspttdviakldwsivnekcept
iyhladcqnwlplnrwmgkltfpqgvtsevrrmplsigggagatqaflanmpnswismwr
yfrgelhfevtkmsspyikatvtfliafgnlsdafgfyesfphrivqfaeveekctlvfs
qqefvtawstqvnprttleadgcpylyaiihdsttgtisgdfnlgvklvgikdfcgigsn
pgidgsrl