PDB entry 6qof

View 6qof on RCSB PDB site
Description: Crystal structure of TrmD, a tRNA-(N1G37) methyltransferase, from Mycobacterium abscessus in complex with Fragment 9 (Adenine)
Class: transferase
Keywords: TrmD, tRNA methyltransferase, SPOUT methyltransferase, TRANSFERASE
Deposited on 2019-02-12, released 2020-02-26
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-08-26, with a file datestamp of 2020-08-21.
Experiment type: XRAY
Resolution: 1.76 Å
R-factor: N/A
AEROSPACI score: 0.46 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: tRNA (guanine-N(1)-)-methyltransferase
    Species: Mycobacterium abscessus [TaxId:36809]
    Gene: trmD, MAB_3226c
    Database cross-references and differences (RAF-indexed):
    • Uniprot B1MDI3 (2-End)
      • expression tag (1)
    Domains in SCOPe 2.08: d6qofa1, d6qofa2
  • Chain 'B':
    Compound: tRNA (guanine-N(1)-)-methyltransferase
    Species: Mycobacterium abscessus [TaxId:36809]
    Gene: trmD, MAB_3226c
    Database cross-references and differences (RAF-indexed):
    • Uniprot B1MDI3 (2-End)
      • expression tag (1)
    Domains in SCOPe 2.08: d6qofb1, d6qofb2
  • Heterogens: ADE, EDO, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6qofA (A:)
gsmkidvvtifpeylqpvrqslpgkaidaglvdvavhdlrrwthdvhksvddspygggpg
mvmkptvwgdaldeictsetllvvptpagypftqetawqwstedhlviacgryegidqrv
addaatrmrvrevsigdyvlnggeaaalviieavlrlvpgvlgnalsaqedshsegmasl
legpsytrppswrgmdvppvllsgdhakiaawraeqsrqrtierrpdllgfdsptgehgg
dgls

    Sequence, based on observed residues (ATOM records): (download) 
    >6qofA (A:)
smkidvvtifpeylqpvrqslpgkaidaglvdvavhdlrrwthdvhksvddspygggpgm
vmkptvwgdaldeictsetllvvptpagypftqetawqwstedhlviacgryegidqrva
ddaatrmrvrevsigdyvlnggeaaalviieavlrlvpgvlsllegpsytrppswrgmdv
ppvllsgdhakiaawraeqsrqrtierrpdllgf

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6qofB (B:)
gsmkidvvtifpeylqpvrqslpgkaidaglvdvavhdlrrwthdvhksvddspygggpg
mvmkptvwgdaldeictsetllvvptpagypftqetawqwstedhlviacgryegidqrv
addaatrmrvrevsigdyvlnggeaaalviieavlrlvpgvlgnalsaqedshsegmasl
legpsytrppswrgmdvppvllsgdhakiaawraeqsrqrtierrpdllgfdsptgehgg
dgls

    Sequence, based on observed residues (ATOM records): (download) 
    >6qofB (B:)
smkidvvtifpeylqpvrqslpgkaidaglvdvavhdlrrwthdvhksvddspygggpgm
vmkptvwgdaldeictsetllvvptpagypftqetawqwstedhlviacgryegidqrva
ddaatrmrvrevsigdyvlnggeaaalviieavlrlvpgvsllegpsytrppswrgmdvp
pvllsgdhakiaawraeqsrqrtierrpdllgfds