PDB entry 6qod

View 6qod on RCSB PDB site
Description: Crystal structure of TrmD, a tRNA-(N1G37) methyltransferase, from Mycobacterium abscessus in complex with Fragment 7 (2-Amino-6-fluorobenzothiazole)
Class: transferase
Keywords: TrmD, tRNA methyltransferase, SPOUT methyltransferase, TRANSFERASE
Deposited on 2019-02-12, released 2020-03-04
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-08-26, with a file datestamp of 2020-08-21.
Experiment type: XRAY
Resolution: 1.85 Å
R-factor: N/A
AEROSPACI score: 0.44 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: tRNA (guanine-N(1)-)-methyltransferase
    Species: Mycobacterium abscessus [TaxId:36809]
    Gene: trmD, MAB_3226c
    Database cross-references and differences (RAF-indexed):
    • Uniprot B1MDI3 (2-End)
      • expression tag (1)
    Domains in SCOPe 2.08: d6qoda1, d6qoda2
  • Chain 'B':
    Compound: tRNA (guanine-N(1)-)-methyltransferase
    Species: Mycobacterium abscessus [TaxId:36809]
    Gene: trmD, MAB_3226c
    Database cross-references and differences (RAF-indexed):
    • Uniprot B1MDI3 (2-End)
      • expression tag (1)
    Domains in SCOPe 2.08: d6qodb1, d6qodb2
  • Heterogens: FBB, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6qodA (A:)
gsmkidvvtifpeylqpvrqslpgkaidaglvdvavhdlrrwthdvhksvddspygggpg
mvmkptvwgdaldeictsetllvvptpagypftqetawqwstedhlviacgryegidqrv
addaatrmrvrevsigdyvlnggeaaalviieavlrlvpgvlgnalsaqedshsegmasl
legpsytrppswrgmdvppvllsgdhakiaawraeqsrqrtierrpdllgfdsptgehgg
dgls

    Sequence, based on observed residues (ATOM records): (download) 
    >6qodA (A:)
smkidvvtifpeylqpvrqslpgkailvdvavhdlrrwthdvhksvddspygggpgmvmk
ptvwgdaldeictsetllvvptpagypftqetawqwstedhlviacgryegidqrvadda
atrmrvrevsigdyvlnggeaaalviieavlrlvpgvsllegpsytrppswrgmdvppvl
lsgdhakiaawraeqsrqrtierrpdllg

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6qodB (B:)
gsmkidvvtifpeylqpvrqslpgkaidaglvdvavhdlrrwthdvhksvddspygggpg
mvmkptvwgdaldeictsetllvvptpagypftqetawqwstedhlviacgryegidqrv
addaatrmrvrevsigdyvlnggeaaalviieavlrlvpgvlgnalsaqedshsegmasl
legpsytrppswrgmdvppvllsgdhakiaawraeqsrqrtierrpdllgfdsptgehgg
dgls

    Sequence, based on observed residues (ATOM records): (download) 
    >6qodB (B:)
smkidvvtifpeylqpvrlpgkaidaglvdvavhdlrrwthdvhksvddspygggpgmvm
kptvwgdaldeictsetllvvptpagypftqetawqwstedhlviacgryegidqrvadd
aatrmrvrevsigdyvlnggeaaalviieavlrlvpgvsllegpsytrppswrgmdvppv
llsgdhakiaawraeqsrqrtierrpdllgfds