PDB entry 6qk7

View 6qk7 on RCSB PDB site
Description: elongator catalytic subcomplex elp123 lobe
Deposited on 2019-01-28, released 2019-07-17
The last revision was dated 2019-12-18, with a file datestamp of 2019-12-13.
Experiment type: EM
Resolution: 3.3 Å
R-factor: N/A
AEROSPACI score: 0.11 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Elongator complex protein 1
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Elongator complex protein 2
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Elongator complex protein 3
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Elongator complex protein 1
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: SF4, 5AD

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6qk7A (A:)
    mvehdksgskrqelrsnmrnlitlnkgkfkptastaegdeddlsftlldsvfdtlsdsit
    cvlgstdigaievqqfmkdgsrnvlasfniqtfddkllsfvhfadinqlvfvfeqgdiit
    atydpvsldpaetlieimgtidngiaaaqwsydeetlamvtkdrnvvvlsklfepiseyh
    levddlkiskhvtvgwgkketqfrgkgaramerealaslkasglvgnqlrdptmpymvdt
    gdvtaldsheitiswrgdcdyfavssveevpdeddetksikrrafrvfsregqldsasep
    vtgmehqlswkpqgsliasiqrktdlgeedsvdviffernglrhgefdtrlpldekvesv
    cwnsnsealavvlanriqlwtsknyhwylkqelyasdisyvkwhpekdftlmfsdagfin
    ivdfaykmaqgptlepfdngtslvvdgrtvnitplalanvpppmyyrdfetpgnvldvac
    sfsneiyaainkdvlifaavpsieemkkgkhpsivcefpkseftsevdslrqvafindsi
    vgvlldtdnlsrialldiqditqptlitivevydkivllrsdfdynhlvyetrdgtvcql
    daegqlmeitkfpqlvrdfrvkrvhntsaedddnwsaesselvafgitnngklfanqvll
    asavtsleitdsfllfttaqhnlqfvhlnstdfkplplveegvedervraiergsilvsv
    ipskssvvlqatrgnletiyprimvlaevrknimakrykeafivcrthrinldilhdyap
    elfienlevfinqigrvdylnlfisclseddvtktkyketlysgisksfgmepapltemq
    iymkkkmfdpktskvnkicdavlnvllsnpeykkkylqtiitayasqnpqnlsaalklis
    elenseekdscvtylcflqdvnvvyksalslydvslallvaqksqmdpreylpflqelqd
    neplrrkfliddylgnyekalehlseidkdgnvseevidyveshdlykhglalyrydsek
    qnviyniyakhlssnqmytdaavayemlgklkeamgayqsakrwreamsiavqkfpeeve
    svaeelissltfehryvdaadiqleyldnvkeavalyckayrydiaslvaikakkdelle
    evvdpglgegfgiiaelladckgqinsqlrrlrelrakkeenpyafygqeteqaddvsva
    psetstqesfftrytgktggtaktgasrrtaknkrreerkrargkkgtiyeeeylvqsvg
    rlierlnqtkpdavrvveglcrrnmreqahqiqknfvevldllkanvkeiysisekdrer
    vnengevyyipeipvpeihdfpkshivdf
    

    Sequence, based on observed residues (ATOM records):
    >6qk7A (A:)
    mrnlitlnkgkfkptastaegdeddlsftlldsvfdtlsdsitcvlgstdigaievqqfm
    kdgsrnvlasfniqtfddkllsfvhfadinqlvfvfeqgdiitatydpvsldpaetliei
    mgtidngiaaaqwsydeetlamvtkdrnvvvlsklfepiseyhlevdtgdvtaldsheit
    iswrgdcdyfavssveevikrrafrvfsregqldsasepvtgmehqlswkpqgsliasiq
    rktdlgeedsvdviffernglrhgefdtrlpldekvesvcwnsnsealavvlanriqlwt
    sknyhwylkqelyasdisyvkwhpekdftlmfsdagfinivdfaykmaqgptlepfdngt
    slvvdgrtvnitplalanvpppmyyrdfetpgnvldvacsfsneiyaainkdvlifaavp
    sieemkkgkhpsivcefpkseftsevdslrqvafindsivgvlldtdnlsrialldiqdi
    tqptlitivevydkivllrsdfdynhlvyetrdgtvcqldaegqlmeitkfpqlvrdfrv
    krvhntsaedddnwsaesselvafgitnngklfanqvllasavtsleitdsfllfttaqh
    nlqfvhlnstdfkplplveegvedervraiergsilvsvipskssvvlqatrgnletiyp
    rimvlaevrknimakrykeafivcrthrinldilhdyapelfienlevfinqigrvdyln
    lfisclseddvtktkyketlysgisksfgmepapltemqiymkkkmfdpktskvnkicda
    vlnvllsnpeykkkylqtiitayasqnpqnlsaalkliselenseekdscvtylcflqdv
    nvvyksalslydvslallvaqksqmdpreylpflqelqdneplrrkfliddylgnyekal
    ehlseidkdgnvseevidyveshdlykhglalyrydsekqnviyniyakhlssnqmytda
    avayemlgklkeamgayqsakrwreamsiavqkfpeevesvaeelissltfehryvdaad
    iqleyldnvkeavalyckayrydiaslvaikakkdelleevvdpglgegfgiiaelladc
    kgqinsqlrrlreeylvqsvgrlierlnqtkpdavrvveglcrrnmreqahqiqknfvev
    ldllkanveihdfpkshivdf
    

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6qk7B (B:)
    mvecitpeaifigankqtqvsdihkvkkivafgagktialwdpiepnnkgvyatlkghea
    evtcvrfvpdsdfmvsasedhhvkiwkftdyshlqciqtiqhysktivalsalpslisvg
    cadgtisiwrqniqndefglaheftikkgffyplclslskveekkyllaiggtnvnvfia
    sfilsdsgiekcrvvaeleghedwvkslafrhqetpgdyllcsgsqdryirlwririndl
    iddseedskkltllsnkqykfqiddelrvginfealimghddwisslqwhesrlqllaat
    adtslmvwepdetsgiwvcslrlgemsskgastatgssggfwsclwfthermdffltngk
    tgswrmwatkdniicdqrlgisgatkdvtdiawspsgeyllatsldqttrlfapwiydas
    grkreiatwhefsrpqihgydmicvetvtdtrfvsggdekilrsfdlpkgvagmlqkfvg
    iqfeeksempdsatvpvlglsnkageddaneddeeeeggnketpditdplsllecppmed
    qlqrhllwpeveklyghgfeitcldispdqkliasacrsnnvqnavirifstenwleikp
    alpfhsltitrlkfskdgkfllsvcrdrkwalwernmedntfelrfknekphtriiwdad
    waplefgnvfvtasrdktvkvwrhqkepaddyvleasikhtkavtaisihdsmirekili
    svglengeiylysytlgkfelitqlneditpadkitrlrwshlkrngklflgvgssdlst
    riyslaye
    

    Sequence, based on observed residues (ATOM records):
    >6qk7B (B:)
    ecitpeaifigankqtqvsdihkvkkivafgagktialwdpiepnnkgvyatlkgheaev
    tcvrfvpdsdfmvsasedhhvkiwkftdyshlqciqtiqhysktivalsalpslisvgca
    dgtisiwrqniqndefglaheftikkgffyplclslskveekkyllaiggtnvnvfiasf
    ilsdsgiekcrvvaeleghedwvkslafrhqetpgdyllcsgsqdryirlwririndlid
    dseedskkltllsnkqykfqiddelrvginfealimghddwisslqwhesrlqllaatad
    tslmvwepdetsgiwvcslrlgesggfwsclwfthermdffltngktgswrmwatkdnii
    cdqrlgisgatkdvtdiawspsgeyllatsldqttrlfapwiydasgrkreiatwhefsr
    pqihgydmicvetvtdtrfvsggdekilrsfdlpkgvagmlqkfvgiqfeeksempdsat
    vpvlglsnkagsllecppmedqlqrhllwpeveklyghgfeitcldispdqkliasacrs
    nnvqnavirifstenwleikpalpfhsltitrlkfskdgkfllsvcrdrkwalwernmed
    ntfelrfknekphtriiwdadwaplefgnvfvtasrdktvkvwrhqkepaddyvleasik
    htkavtaisihdsmirekilisvglengeiylysytlgkfelitqlneditpadkitrlr
    wshlkrngklflgvgssdlstriyslaye
    

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6qk7C (C:)
    marhgkgpktnkkklapekerfiqccaditleltdsltsgttreinlnglitkyskkykl
    kqqprltdiinsipdqykkyllpklkakpvrtasgiavvavmckphrcphiaytgnicvy
    cpggpdsdfeystqsytgyeptsmrairarydpyeqargrveqlkqlghsidkveyvlmg
    gtfmslpkeyredfivklhnalsgfngndideailysqqsltkcvgitietrpdyctqth
    lddmlkygctrleigvqslyedvardtnrghtvrsvcetfavskdagykvvshmmpdlpn
    vgmerdieqfkeyfenpdfrtdglkiyptlvirgtglyelwktgryksysanalvdlvar
    ilalvppwtriyrvqrdipmplvtsgvdngnlrelalarmkdlgttcrdvrtrevgiqev
    hhkvqpdqvelirrdyyanggwetflsyedpkkdiligllrlrkaskkytyrkeftsqrt
    sivrelhvygsvvplhsrdprkfqhqgfgtllmeeaeriakeehgsekisvisgvgvrny
    ygklgyeldgpymskri
    

    Sequence, based on observed residues (ATOM records):
    >6qk7C (C:)
    sgiavvavmckphrcphiaytgnicvycpggpdsdfeystqsytgyeptsmrairarydp
    yeqargrveqlkqlghsidkveyvlmggtfmslpkeyredfivklhnalsgfngndidea
    ilysqqsltkcvgitietrpdyctqthlddmlkygctrleigvqslyedvardtnrghtv
    rsvcetfavskdagykvvshmmpdlpnvgmerdieqfkeyfenpdfrtdglkiyptlvir
    gtglyelwktgryksysanalvdlvarilalvppwtriyrvqrdipmplvtsgvdngnlr
    elalarmkdlgttcrdvrtrevgvqpdqvelirrdyyanggwetflsyedpkkdiligll
    rlrkaskkytyrkeftsqrtsivrelhvygqhqgfgtllmeeaeriakeehgsekisvis
    gvgvrnyygklgyeldgpymskri
    

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6qk7D (D:)
    mvehdksgskrqelrsnmrnlitlnkgkfkptastaegdeddlsftlldsvfdtlsdsit
    cvlgstdigaievqqfmkdgsrnvlasfniqtfddkllsfvhfadinqlvfvfeqgdiit
    atydpvsldpaetlieimgtidngiaaaqwsydeetlamvtkdrnvvvlsklfepiseyh
    levddlkiskhvtvgwgkketqfrgkgaramerealaslkasglvgnqlrdptmpymvdt
    gdvtaldsheitiswrgdcdyfavssveevpdeddetksikrrafrvfsregqldsasep
    vtgmehqlswkpqgsliasiqrktdlgeedsvdviffernglrhgefdtrlpldekvesv
    cwnsnsealavvlanriqlwtsknyhwylkqelyasdisyvkwhpekdftlmfsdagfin
    ivdfaykmaqgptlepfdngtslvvdgrtvnitplalanvpppmyyrdfetpgnvldvac
    sfsneiyaainkdvlifaavpsieemkkgkhpsivcefpkseftsevdslrqvafindsi
    vgvlldtdnlsrialldiqditqptlitivevydkivllrsdfdynhlvyetrdgtvcql
    daegqlmeitkfpqlvrdfrvkrvhntsaedddnwsaesselvafgitnngklfanqvll
    asavtsleitdsfllfttaqhnlqfvhlnstdfkplplveegvedervraiergsilvsv
    ipskssvvlqatrgnletiyprimvlaevrknimakrykeafivcrthrinldilhdyap
    elfienlevfinqigrvdylnlfisclseddvtktkyketlysgisksfgmepapltemq
    iymkkkmfdpktskvnkicdavlnvllsnpeykkkylqtiitayasqnpqnlsaalklis
    elenseekdscvtylcflqdvnvvyksalslydvslallvaqksqmdpreylpflqelqd
    neplrrkfliddylgnyekalehlseidkdgnvseevidyveshdlykhglalyrydsek
    qnviyniyakhlssnqmytdaavayemlgklkeamgayqsakrwreamsiavqkfpeeve
    svaeelissltfehryvdaadiqleyldnvkeavalyckayrydiaslvaikakkdelle
    evvdpglgegfgiiaelladckgqinsqlrrlrelrakkeenpyafygqeteqaddvsva
    psetstqesfftrytgktggtaktgasrrtaknkrreerkrargkkgtiyeeeylvqsvg
    rlierlnqtkpdavrvveglcrrnmreqahqiqknfvevldllkanvkeiysisekdrer
    vnengevyyipeipvpeihdfpkshivdf
    

    Sequence, based on observed residues (ATOM records):
    >6qk7D (D:)
    lykhglalyrydsekqnviyniyakhlssnqmytdaavayemlgklkeamgayqsakrwr
    eamsiavqkfpeevesvaeelissltfehryvdaadiqleyldnvkeavalyckayrydi
    aslvaikakkdelleevvdpglgegfgiiaelladckgqinsqlrreeylvqsvgrlier
    lnqtkpdavrvveglcrrnmreqahqiqknfvevldllkanvkeieihdfpkshivdf