PDB entry 6qj5
View 6qj5 on RCSB PDB site
Description: X-ray structure of PPARgamma LBD with the ligand NV1380
Class: DNA binding protein
Keywords: BUNDLE OF ALPHA-HELICES and SMALL FOUR-STRANDED BETA-SHEET, transcription factor, dna-binding, diabetes type II, DNA BINDING PROTEIN
Deposited on
2019-01-22, released
2020-02-05
The last revision prior to the SCOPe 2.08 freeze date was dated
2020-11-25, with a file datestamp of
2020-11-20.
Experiment type: XRAY
Resolution: 2 Å
R-factor: N/A
AEROSPACI score: 0.38
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Peroxisome proliferator-activated receptor gamma
Species: Homo sapiens [TaxId:9606]
Gene: PPARG, NR1C3
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d6qj5a_ - Chain 'B':
Compound: Peroxisome proliferator-activated receptor gamma
Species: Homo sapiens [TaxId:9606]
Gene: PPARG, NR1C3
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d6qj5b_ - Heterogens: H8R, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>6qj5A (A:)
mgsshhhhhhssglvprgshmaeissdidqlnpesadlralakhlydsyiksfpltkaka
railtgkttdkspfviydmnslmmgedkikfkhitplqeqskevairifqgcqfrsveav
qeiteyaksipgfvnldlndqvtllkygvheiiytmlaslmnkdgvlisegqgfmtrefl
kslrkpfgdfmepkfefavkfnalelddsdlaifiaviilsgdrpgllnvkpiediqdnl
lqalelqlklnhpessqlfakllqkmtdlrqivtehvqllqvikktetdmslhpllqeiy
kdly
Sequence, based on observed residues (ATOM records): (download)
>6qj5A (A:)
esadlralakhlydsyiksfpltkakarailtgkttdkspfviydmnslmmgevairifq
gcqfrsveavqeiteyaksipgfvnldlndqvtllkygvheiiytmlaslmnkdgvlise
gqgfmtreflkslrkpfgdfmepkfefavkfnalelddsdlaifiaviilsgdrpgllnv
kpiediqdnllqalelqlklnhpessqlfakllqkmtdlrqivtehvqllqvikktetdm
slhpllqeiyk
- Chain 'B':
Sequence, based on SEQRES records: (download)
>6qj5B (B:)
mgsshhhhhhssglvprgshmaeissdidqlnpesadlralakhlydsyiksfpltkaka
railtgkttdkspfviydmnslmmgedkikfkhitplqeqskevairifqgcqfrsveav
qeiteyaksipgfvnldlndqvtllkygvheiiytmlaslmnkdgvlisegqgfmtrefl
kslrkpfgdfmepkfefavkfnalelddsdlaifiaviilsgdrpgllnvkpiediqdnl
lqalelqlklnhpessqlfakllqkmtdlrqivtehvqllqvikktetdmslhpllqeiy
kdly
Sequence, based on observed residues (ATOM records): (download)
>6qj5B (B:)
esadlralakhlydsyiksfpltkakarailtgkttdkspfviydmnslmmevairifqg
cqfrsveavqeiteyaksipgfvnldlndqvtllkygvheiiytmlaslmnkdgvliseg
qgfmtreflkslkpfgdfmepkfefavkfnalelddsdlaifiaviilsgdrpgllnvkp
iediqdnllqalelqlklnhpessqlfakllqkmtdlrqivtehvqllqvikktetdmsl
hpllqeiy