PDB entry 6qj5

View 6qj5 on RCSB PDB site
Description: X-ray structure of PPARgamma LBD with the ligand NV1380
Class: DNA binding protein
Keywords: BUNDLE OF ALPHA-HELICES and SMALL FOUR-STRANDED BETA-SHEET, transcription factor, dna-binding, diabetes type II, DNA BINDING PROTEIN
Deposited on 2019-01-22, released 2020-02-05
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-11-25, with a file datestamp of 2020-11-20.
Experiment type: XRAY
Resolution: 2 Å
R-factor: N/A
AEROSPACI score: 0.38 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Peroxisome proliferator-activated receptor gamma
    Species: Homo sapiens [TaxId:9606]
    Gene: PPARG, NR1C3
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6qj5a_
  • Chain 'B':
    Compound: Peroxisome proliferator-activated receptor gamma
    Species: Homo sapiens [TaxId:9606]
    Gene: PPARG, NR1C3
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6qj5b_
  • Heterogens: H8R, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >6qj5A (A:)
    mgsshhhhhhssglvprgshmaeissdidqlnpesadlralakhlydsyiksfpltkaka
    railtgkttdkspfviydmnslmmgedkikfkhitplqeqskevairifqgcqfrsveav
    qeiteyaksipgfvnldlndqvtllkygvheiiytmlaslmnkdgvlisegqgfmtrefl
    kslrkpfgdfmepkfefavkfnalelddsdlaifiaviilsgdrpgllnvkpiediqdnl
    lqalelqlklnhpessqlfakllqkmtdlrqivtehvqllqvikktetdmslhpllqeiy
    kdly
    

    Sequence, based on observed residues (ATOM records): (download)
    >6qj5A (A:)
    esadlralakhlydsyiksfpltkakarailtgkttdkspfviydmnslmmgevairifq
    gcqfrsveavqeiteyaksipgfvnldlndqvtllkygvheiiytmlaslmnkdgvlise
    gqgfmtreflkslrkpfgdfmepkfefavkfnalelddsdlaifiaviilsgdrpgllnv
    kpiediqdnllqalelqlklnhpessqlfakllqkmtdlrqivtehvqllqvikktetdm
    slhpllqeiyk
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >6qj5B (B:)
    mgsshhhhhhssglvprgshmaeissdidqlnpesadlralakhlydsyiksfpltkaka
    railtgkttdkspfviydmnslmmgedkikfkhitplqeqskevairifqgcqfrsveav
    qeiteyaksipgfvnldlndqvtllkygvheiiytmlaslmnkdgvlisegqgfmtrefl
    kslrkpfgdfmepkfefavkfnalelddsdlaifiaviilsgdrpgllnvkpiediqdnl
    lqalelqlklnhpessqlfakllqkmtdlrqivtehvqllqvikktetdmslhpllqeiy
    kdly
    

    Sequence, based on observed residues (ATOM records): (download)
    >6qj5B (B:)
    esadlralakhlydsyiksfpltkakarailtgkttdkspfviydmnslmmevairifqg
    cqfrsveavqeiteyaksipgfvnldlndqvtllkygvheiiytmlaslmnkdgvliseg
    qgfmtreflkslkpfgdfmepkfefavkfnalelddsdlaifiaviilsgdrpgllnvkp
    iediqdnllqalelqlklnhpessqlfakllqkmtdlrqivtehvqllqvikktetdmsl
    hpllqeiy