PDB entry 6qct

View 6qct on RCSB PDB site
Description: influenza b polymerase elongation complex
Deposited on 2018-12-30, released 2019-06-05
The last revision was dated 2020-01-29, with a file datestamp of 2020-01-24.
Experiment type: EM
Resolution: 3.2 Å
R-factor: N/A
AEROSPACI score: 0.11 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Polymerase acidic protein
    Species: Influenza B virus (B/Memphis/13/2003) [TaxId:1601067]
    Gene: PA
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: RNA-directed RNA polymerase catalytic subunit
    Species: Influenza B virus [TaxId:11520]
    Gene: Pb1
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q5V8Y6 (9-End)
      • expression tag (8)
  • Chain 'C':
    Compound: Polymerase basic protein 2
    Species: Influenza B virus (B/Memphis/13/2003) [TaxId:1601067]
    Gene: pb2
    Database cross-references and differences (RAF-indexed):
  • Chain 'M':
    Compound: capped RNA
    Species: Influenza B virus, synthetic [TaxId:11520]
  • Chain 'R':
    Compound: 3 end
    Species: Influenza B virus, synthetic [TaxId:11520]
  • Chain 'V':
    Compound: 5 end
    Species: Influenza B virus, synthetic [TaxId:11520]
  • Heterogens: MG

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6qctA (A:)
    gshhhhhhhhgsgsmdtfitrnfqttiiqkakntmaefsedpelqpamlfnicvhlevcy
    visdmnfldeegkaytalegqgkeqnlrpqyeviegmprtiawmvqrslaqehgietpky
    ladlfdyktkrfievgitkgladdyfwkkkeklgnsmelmifsynqdyslsnessldeeg
    kgrvlsrltelqaelslknlwqvligeedvekgidfklgqtisrlrdisvpagfsnfegm
    rsyidnidpkgaiernlarmsplvsvtpkkltwedlrpigphiynhelpevpynafllms
    delglanmtegkskkpktlakeclekystlrdqtdpilimksekanenflwklwrdcvnt
    isneemsnelqktnyakwatgdgltyqkimkevaiddetmcqeepkipnkcrvaawvqte
    mnllstltskraldlpeigpdvapvehvgserrkyfvneinyckastvmmkyvlfhtsll
    nesnasmgkykvipitnrvvnekgesfdmlyglavkgqshlrgdtdvvtvvtfefsstdp
    rvdsgkwpkytvfrigslfvsgreksvylycrvngtnkiqmkwgmearrcllqsmqqmea
    iveqessiqgydmtkacfkgdrvnspktfsigtqegklvkgsfgkalrviftkclmhyvf
    gnaqlegfsaesrrlllliqalkdrkgpwvfdlegmysgieecisnnpwviqsaywfnew
    lgfekegskvlesvdeimdegsgsgenlyfq
    

    Sequence, based on observed residues (ATOM records):
    >6qctA (A:)
    mdtfitrnfqttiiqkakntmaefsedpelqpamlfnicvhlevcyvisdmnfldeegka
    ytalegqgkeqnlrpqyeviegmprtiawmvqrslaqehgietpkyladlfdyktkrfie
    vgitkgladdyfwkkkeklgnsmelmifsynqdyslsnessldeegkgrvlsrltelqae
    lslknlwqvligeedvekgidfklgqtisrlrdisvpagfsnfegmrsyidnidpkgaie
    rnlarmsplvsvtpkkltwedlrpigphiynhelpevpynafllmsdelglanmtegksk
    kpktlakeclekystlrdqtdpilimksekanenflwklwrdcvntisneemsnelqktn
    yakwatgdgltyqkimkevaiddetmcqeepkipnkcrvaawvqtemnllstltskrald
    lpeigpdvapvehvgserrkyfvneinyckastvmmkyvlfhtsllnesnasmgkykvip
    itnrvvnekgesfdmlyglavkgqshlrgdtdvvtvvtfefsstdprvdsgkwpkytvfr
    igslfvsgreksvylycrvngtnkiqmkwgmearrcllqsmqqmeaiveqessiqgydmt
    kacfkgdrvnspktfsigtqegklvkgsfgkalrviftkclmhyvfgnaqlegfsaesrr
    lllliqalkdrkgpwvfdlegmysgieecisnnpwviqsaywfnewlgfekegskvlesv
    de
    

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6qctB (B:)
    gsgsgsgsgmninpyflfidvpiqaaisttfpytgvppyshgtgtgytidtvirtheysn
    kgkqyisdvtgctmvdptngplpednepsayaqldcvlealdrmdeehpglfqaasqnam
    etlmvttvdkltqgrqtfdwtvcrnqpaatalnttitsfrlndlngadkgglipfcqdii
    dsldrpemtffsvknikkklpaknrkgflikripmkvkdkitkveyikralslntmtkda
    ergklkrraiatagiqirgfvlvvenlaknicenleqsglpvggnekkaklsnavakmls
    ncppggismtvtgdntkwneclnpriflamteritrdspiwfrdfcsiapvlfsnkiarl
    gkgfmitsktkrlkaqipcpdlfsipleryneetraklkklkpffneegtaslspgmmmg
    mfnmlstvlgvaalgiknignkeylwdglqssddfalfvnakdeetcmegindfyrtckl
    lginmskkksycnetgmfeftsmfyrdgfvsnfamelpsfgvagvnesadmaigmtiikn
    nminngmgpataqtaiqlfiadyrytykchrgdskvegkrmkiikelwentkgrdgllva
    dggpniynlrnlhipeivlkynlmdpeykgrllhpqnpfvghlsiegikeaditpahgpv
    kkmdydavsgthswrtkrnrsilntdqrnmileeqcyakccnlfeacfnsasyrkpvgqh
    smleamahrlrmdarldyesgrmskddfekamahlgeigyigsgsgenlyfq
    

    Sequence, based on observed residues (ATOM records):
    >6qctB (B:)
    gmninpyflfidvpiqaaisttfpytgvppyshgtgtgytidtvirtheysnkgkqyisd
    vtgctmvdptngplpednepsayaqldcvlealdrmdeehpglfqaasqnametlmvttv
    dkltqgrqtfdwtvcrnqpaatalnttitsfrlndlngadkgglipfcqdiidsldrpem
    tffsvknikkklpaknrkgflikripmkvkdkitkveyikralslntmtkdaergklkrr
    aiatagiqirgfvlvvenlaknicenleqsglpvggnekkaklsnavakmlsncppggis
    mtvtgdntkwneclnpriflamteritrdspiwfrdfcsiapvlfsnkiarlgkgfmits
    ktkrlkaqipcpdlfsipleryneetraklkklkpffneegtaslspgmmmgmfnmlstv
    lgvaalgiknignkeylwdglqssddfalfvnakdeetcmegindfyrtckllginmskk
    ksycnetgmfeftsmfyrdgfvsnfamelpsfgvagvnesadmaigmtiiknnminngmg
    pataqtaiqlfiadyrytykchrgdskvegkrmkiikelwentkgrdgllvadggpniyn
    lrnlhipeivlkynlmdpeykgrllhpqnpfvghlsiekmdydavsgthswrtkrnrsil
    ntdqrnmileeqcyakccnlfeacfnsasyrkpvgqhsmleamahrlrmdarldyesgrm
    skddfekamahlgei
    

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6qctC (C:)
    gsgsgsgsgmtlakiellkqllrdneaktvlkqttvdqyniirkfntsrieknpslrmkw
    amcsnfplaltkgdmanripleykgiqlktnaedigtkgqmcsiaavtwwntygpigdte
    gfervyesfflrkmrldnatwgritfgpvervrkrvllnpltkemppdeasnvimeilfp
    keagiprestwihrelikekreklkgtmitpivlaymlerelvarrrflpvagatsaefi
    emlhclqgenwrqiyhpggnkltesrsqsmivacrkiirrsivasnplelaveianktvi
    dteplksclaaidggdvacdiiraalglkirqrqrfgrlelkrisgrgfkndeeiligng
    tiqkigiwdgeeefhvrcgecrgilkkskmklekllinsakkedmrdliilcmvfsqdtr
    mfqgvrgeinflnragqllspmyqlqryflnrsndlfdqwgyeespkaselhginesmna
    sdytlkgvvvtrnviddfsstetekvsitknlslikrtgevimgandvselesqaqlmit
    ydtpkmwemgttkelvqntyqwvlknlvtlkaqfllgkedmfqwdafeafesiipqkmag
    qysgfaravlkqmrdqevmktdqfikllpfcfsppklrsngepyqflklvlkgggenfie
    vrkgsplfsynpqtevlticgrmmslkgkiedeernrsmgnavlagflvsgkydpdlgdf
    ktieeleklkpgekanillyqgkpvkvvkrkrysalsndisqgikrqrmtvesmgwalsg
    wshpqfekgsgsenlyfq
    

    Sequence, based on observed residues (ATOM records):
    >6qctC (C:)
    mtlakiellkqllrdneaktvlkqttvdqyniirkfntsrieknpslrmkwamcsnfpla
    ltkgdmanripleykgiqlktnaedigtkgqmcsiaavtwwntygpigdtegfervyesf
    flrkmrldnatwgritfgpvervrkrvllnpltkemppdeasnvimeilfpkeagipres
    twihrelikekreklkgtmitpivlaymlerelvarrrflpvagatsaefiemlhclqge
    nwrqiyhpggnkltesrsqsmivacrkiirrsivasnplelaveianktvidteplkscl
    aaidggdvacdiiraalglkirqrqrfgrlelkrisgrgfkndeeiligngtiqkigiwd
    geeefhvrcgecrgilkkskmklekllinsakkedmrdliilcmvfsqdtrmfqgvrgei
    nflnragqllspmyqlqryflnrsndlfdqwgyeespkaselhginesmnasdytlkgvv
    vtrnkvsitknlslikrtgevimgandvselesqaqlmitydtpkmwemgttkelvqnty
    qwvlknlvtlkaqfllgkedmfqwdafeafesiipqkmagqysgfaravlkqmrdqevmk
    tdqfikllpfcfsppklrsngepyqflklvlkgggenfievrkgsplfsynpqtevltic
    grmmslkgkiedeernrsmgnavlagflvsgkydpdlgdfktieeleklkpgekanilly
    qgkpvkvvk
    

  • Chain 'M':
    No sequence available.

  • Chain 'R':
    No sequence available.

  • Chain 'V':
    No sequence available.