PDB entry 6q9j

View 6q9j on RCSB PDB site
Description: crystal structure of reduced aquifex aeolicus nadh-quinone oxidoreductase subunits nuoe g129s and nuof bound to nadh
Deposited on 2018-12-18, released 2019-06-26
The last revision was dated 2019-06-26, with a file datestamp of 2019-06-21.
Experiment type: XRAY
Resolution: 1.83 Å
R-factor: N/A
AEROSPACI score: 0.36 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: NADH-quinone oxidoreductase subunit E
    Species: Aquifex aeolicus (strain VF5) [TaxId:224324]
    Gene: nuoE, aq_574
    Database cross-references and differences (RAF-indexed):
    • Uniprot O66842 (Start-159)
      • engineered mutation (128)
  • Chain 'B':
    Compound: NADH-quinone oxidoreductase subunit F
    Species: Aquifex aeolicus (strain VF5) [TaxId:224324]
    Gene: nuoF, aq_573
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: NADH-quinone oxidoreductase subunit E
    Species: Aquifex aeolicus (strain VF5) [TaxId:224324]
    Gene: nuoE, aq_574
    Database cross-references and differences (RAF-indexed):
    • Uniprot O66842 (Start-159)
      • engineered mutation (128)
  • Chain 'D':
    Compound: NADH-quinone oxidoreductase subunit F
    Species: Aquifex aeolicus (strain VF5) [TaxId:224324]
    Gene: nuoF, aq_573
    Database cross-references and differences (RAF-indexed):
  • Heterogens: FES, SO4, SF4, FMN, NAI, GOL, NA, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6q9jA (A:)
mfktefefpeelktklqehinyfpkkrqaillclheiqnyygyippeslkpladmlelpl
nhvegvvafydmfdredkakyrirvcvsivchlmgtnkllkalenilgikpgevtpdgkf
kivpvqclsacseapvfmvnddeykfesevqlneilsryt

    Sequence, based on observed residues (ATOM records):
    >6q9jA (A:)
efefpeelktklqehinyfpkkrqaillclheiqnyygyippeslkpladmlelplnhve
gvvafydmfdredkakyrirvcvsivchlmgtnkllkalenilgikpgevtpdgkfkivp
vqclsacseapvfmvnddeykfesevqlneilsryt

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6q9jB (B:)
mrsypaipriyaettlnmllkrakkprvhsideylkdggyqalekalnmspeeiidwvdk
stlrgrggagfptgkkwkfavqnpgpryficnadesepgtfkdriiierdphlliegiii
ssyaiganeayiyirgeypagyyilrdaieeakkkgflgknilgsgfdleiyvargagay
icgeetalieslegkrghprlkppypvqkglwgkptvvnnvetianvpfiismgweeyry
igpsdyagpklfpvsgkvkkpgvyelpmnttlrevifkyaggtlgnkkvkavfsgaldcf
sseeldipmdysplgfggtgtvivlteeddiveaalkiaefyehetcgqctpcrvgcyeq
anllekiykgeateqdwegfdfvnrniqptsicglgavagrlirqtlekfpeewekyrkk
saslplaghhhhhh

    Sequence, based on observed residues (ATOM records):
    >6q9jB (B:)
rsypaipriyaettlnmllkrakkprvhsideylkdggyqalekalnmspeeiidwvdks
tlrgrggagfptgkkwkfavqnpgpryficnadesepgtfkdriiierdphlliegiiis
syaiganeayiyirgeypagyyilrdaieeakkkgflgknilgsgfdleiyvargagayi
cgeetalieslegkrghprlkppypvqkglwgkptvvnnvetianvpfiismgweeyryi
gpsdyagpklfpvsgkvkkpgvyelpmnttlrevifkyaggtlgnkkvkavfsgaldcfs
seeldipmdysplgfggtgtvivlteeddiveaalkiaefyehetcgqctpcrvgcyeqa
nllekiykgeateqdwegfdfvnrniqptsicglgavagrlirqtlekfpeewekyrk

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6q9jC (C:)
mfktefefpeelktklqehinyfpkkrqaillclheiqnyygyippeslkpladmlelpl
nhvegvvafydmfdredkakyrirvcvsivchlmgtnkllkalenilgikpgevtpdgkf
kivpvqclsacseapvfmvnddeykfesevqlneilsryt

    Sequence, based on observed residues (ATOM records):
    >6q9jC (C:)
fefpeelktklqehinyfpkkrqaillclheiqnyygyippeslkpladmlelplnhveg
vvafydmfdredkakyrirvcvsivchlmgtnkllkalenilgikpgevtpdgkfkivpv
qclsacseapvfmvnddeykfesevqlneilsryt

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6q9jD (D:)
mrsypaipriyaettlnmllkrakkprvhsideylkdggyqalekalnmspeeiidwvdk
stlrgrggagfptgkkwkfavqnpgpryficnadesepgtfkdriiierdphlliegiii
ssyaiganeayiyirgeypagyyilrdaieeakkkgflgknilgsgfdleiyvargagay
icgeetalieslegkrghprlkppypvqkglwgkptvvnnvetianvpfiismgweeyry
igpsdyagpklfpvsgkvkkpgvyelpmnttlrevifkyaggtlgnkkvkavfsgaldcf
sseeldipmdysplgfggtgtvivlteeddiveaalkiaefyehetcgqctpcrvgcyeq
anllekiykgeateqdwegfdfvnrniqptsicglgavagrlirqtlekfpeewekyrkk
saslplaghhhhhh

    Sequence, based on observed residues (ATOM records):
    >6q9jD (D:)
rsypaipriyaettlnmllkrakkprvhsideylkdggyqalekalnmspeeiidwvdks
tlrgrggagfptgkkwkfavqnpgpryficnadesepgtfkdriiierdphlliegiiis
syaiganeayiyirgeypagyyilrdaieeakkkgflgknilgsgfdleiyvargagayi
cgeetalieslegkrghprlkppypvqkglwgkptvvnnvetianvpfiismgweeyryi
gpsdyagpklfpvsgkvkkpgvyelpmnttlrevifkyaggtlgnkkvkavfsgaldcfs
seeldipmdysplgfggtgtvivlteeddiveaalkiaefyehetcgqctpcrvgcyeqa
nllekiykgeateqdwegfdfvnrniqptsicglgavagrlirqtlekfpeewekyrk