PDB entry 6q7j

View 6q7j on RCSB PDB site
Description: gh3 exo-beta-xylosidase (xlnd) in complex with xylobiose aziridine activity based probe
Deposited on 2018-12-13, released 2019-06-05
The last revision was dated 2020-07-29, with a file datestamp of 2020-06-29.
Experiment type: XRAY
Resolution: 2.14 Å
R-factor: N/A
AEROSPACI score: 0.33 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Exo-1,4-beta-xylosidase xlnD
    Species: Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) [TaxId:227321]
    Gene: xlnD, xylA, AN2359
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q5BAS1 (1-End)
      • expression tag (0)
  • Chain 'B':
    Compound: Exo-1,4-beta-xylosidase xlnD
    Species: Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) [TaxId:227321]
    Gene: xlnD, xylA, AN2359
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q5BAS1 (1-End)
      • expression tag (0)
  • Heterogens: NAG, HLB, EDO, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6q7jA (A:)
eantsytdynveanpdlfplclqhlnasfpdcasgplsltpvcdrslspkdratalvslf
tfdelvnntgntglgvsrlglpnyqvwgealhgvgranfvesgnfswatsfpmpitmmaa
lnktlihqigtivstqlrafsnaglggvdvyspnintfrhpvwgrgqetpgedafltsvy
gyeyitalqggvdpetlkiiatakhyagydieswnnhsrlgndmqitqqelseyytppfi
vasrdakvrsvmcsynavngvpscankfflqtllrdtfefsedgyvsgdcgavynvwnph
gyasneaaasadsilagtdidcgtsyqwhsedafedslvsrsdiergvirlysnlvqagy
fdgedapyrditwddvlstdawniayeaavegivllkndetlplskdiksvavigpwanv
teelqgnyfgpapylispltgfrdsgldvhyalgtnltshstsgfeealtaakqadaiif
aggidntieaeamdrenitwpgnqldlisklselgkplvvlqmgggqvdssslkdndnvn
aliwggypgqsgghaladiitgkrapagrlvttqypaeyaevfpaidmnlrpnetsgnpg
qtymwytgtpvyefghglfyttfeestettdagsfniqtvlttphsgyehaqqktllnft
atvkntgeresdytalvyvnttagpapypkkwvvgfdrlgglepgdsqtltvpvtvesva
rtdeqgnrvlypgsyelalnnersvvvkfelkgeeavilswpedttsdfvssidggldrk
qdvia

    Sequence, based on observed residues (ATOM records):
    >6q7jA (A:)
eantsytdynveanpdlfplclqhlnasfpdcasgplsltpvcdrslspkdratalvslf
tfdelvnntgntglgvsrlglpnyqvwgealhgvgranfvesgnfswatsfpmpitmmaa
lnktlihqigtivstqlrafsnaglggvdvyspnintfrhpvwgrgqetpgedafltsvy
gyeyitalqggvdpetlkiiatakhyagydieswnnhsrlgndmqitqqelseyytppfi
vasrdakvrsvmcsynavngvpscankfflqtllrdtfefsedgyvsgdcgavynvwnph
gyasneaaasadsilagtdidcgtsyqwhsedafedslvsrsdiergvirlysnlvqagy
fdgedapyrditwddvlstdawniayeaavegivllkndetlplskdiksvavigpwanv
teelqgnyfgpapylispltgfrdsgldvhyalgtnltshstsgfeealtaakqadaiif
aggidntieaeamdrenitwpgnqldlisklselgkplvvlqmgggqvdssslkdndnvn
aliwggypgqsgghaladiitgkrapagrlvttqypaeyaevfpaidmnlrpnetsgnpg
qtymwytgtpvyefghglfyttfeestettdagsfniqtvlttphsgyehaqqktllnft
atvkntgeresdytalvyvnttagpapypkkwvvgfdrlgglepgdsqtltvpvtvesva
rtdeqgnrvlypgsyelalnnersvvvkfelkgeeavilswpedttsdfv

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6q7jB (B:)
eantsytdynveanpdlfplclqhlnasfpdcasgplsltpvcdrslspkdratalvslf
tfdelvnntgntglgvsrlglpnyqvwgealhgvgranfvesgnfswatsfpmpitmmaa
lnktlihqigtivstqlrafsnaglggvdvyspnintfrhpvwgrgqetpgedafltsvy
gyeyitalqggvdpetlkiiatakhyagydieswnnhsrlgndmqitqqelseyytppfi
vasrdakvrsvmcsynavngvpscankfflqtllrdtfefsedgyvsgdcgavynvwnph
gyasneaaasadsilagtdidcgtsyqwhsedafedslvsrsdiergvirlysnlvqagy
fdgedapyrditwddvlstdawniayeaavegivllkndetlplskdiksvavigpwanv
teelqgnyfgpapylispltgfrdsgldvhyalgtnltshstsgfeealtaakqadaiif
aggidntieaeamdrenitwpgnqldlisklselgkplvvlqmgggqvdssslkdndnvn
aliwggypgqsgghaladiitgkrapagrlvttqypaeyaevfpaidmnlrpnetsgnpg
qtymwytgtpvyefghglfyttfeestettdagsfniqtvlttphsgyehaqqktllnft
atvkntgeresdytalvyvnttagpapypkkwvvgfdrlgglepgdsqtltvpvtvesva
rtdeqgnrvlypgsyelalnnersvvvkfelkgeeavilswpedttsdfvssidggldrk
qdvia

    Sequence, based on observed residues (ATOM records):
    >6q7jB (B:)
eantsytdynveanpdlfplclqhlnasfpdcasgplsltpvcdrslspkdratalvslf
tfdelvnntgntglgvsrlglpnyqvwgealhgvgranfvesgnfswatsfpmpitmmaa
lnktlihqigtivstqlrafsnaglggvdvyspnintfrhpvwgrgqetpgedafltsvy
gyeyitalqggvdpetlkiiatakhyagydieswnnhsrlgndmqitqqelseyytppfi
vasrdakvrsvmcsynavngvpscankfflqtllrdtfefsedgyvsgdcgavynvwnph
gyasneaaasadsilagtdidcgtsyqwhsedafedslvsrsdiergvirlysnlvqagy
fdgedapyrditwddvlstdawniayeaavegivllkndetlplskdiksvavigpwanv
teelqgnyfgpapylispltgfrdsgldvhyalgtnltshstsgfeealtaakqadaiif
aggidntieaeamdrenitwpgnqldlisklselgkplvvlqmgggqvdssslkdndnvn
aliwggypgqsgghaladiitgkrapagrlvttqypaeyaevfpaidmnlrpnetsgnpg
qtymwytgtpvyefghglfyttfeestettdagsfniqtvlttphsgyehaqqktllnft
atvkntgeresdytalvyvnttagpapypkkwvvgfdrlgglepgdsqtltvpvtvesva
rtdeqgnrvlypgsyelalnnersvvvkfelkgeeavilswpedttsdf