PDB entry 6q2f

View 6q2f on RCSB PDB site
Description: structure of rhamnosidase from novosphingobium sp. pp1y
Deposited on 2019-08-07, released 2019-11-27
The last revision was dated 2019-12-18, with a file datestamp of 2019-12-13.
Experiment type: XRAY
Resolution: 2.2 Å
R-factor: N/A
AEROSPACI score: 0.26 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Glycoside hydrolase family protein
    Species: Novosphingobium sp. PP1Y [TaxId:702113]
    Gene: PP1Y_Mpl10172
    Database cross-references and differences (RAF-indexed):
  • Heterogens: NA, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6q2fA (A:)
mprlslrivlclatalstlpvhaesrddaaevapstrpepsleqafkdppssarprvwwh
wmngnitkdgirkdlewmkrvgigglqnfdanlqtpqivdhrlvymtpewkdafrfaahe
adrldlelaiaaspgwsetggpwvkpqdglkklvwsettlaggqrfvgrlasppgttgpf
qtlhppvtieeiisgvpaetggvsyagevgvlafpvpdiaslpvpraldgagnvlagkal
vdadiaggvtlarvdgkapllrldyqrpvtvrsatvfvpnvripfagaafagtlessqdg
ktwtpikalelsnvpttisfapveaahfrlvlnpgqpdaalgspapgvagndlfgaiask
ragqpimvgqfelhsdalvdryetkagfvmsrdyyalvgphdnvtgvdpdsvidltdklk
adgtldwaapklpagqhwrvlrlgysllgttnhpappeatglevdkfdgeavreylehyi
gmykdaagpdmvgkrgvralltdsievgeanwtprmleqfqrlrgydarpwlpaltgtlv
gtreqsdrflydyrrtladllasehygtvadvahendlkvygealedhrpmlgddmamrs
hadipmaalwtfnrdegprqtliadmkgaasvahlygqnlvaaesmtasmapwafapkdl
krfidlefvtgvnrpvihtsvhvpvddkkpglslaifgqyfnrqeswaemarpwvdyiar
sslllqtgrnvadvayfygeeapltglygdepvadapvryaydyinfnaltellandged
lvapsgaryktiylggssshmtlaalrklaalvvggatvvgkapiatpsntsaqegdlte
wsslvarlwpgsgdarvgkgrviasqdiesalqamdvapdftftgadagvkipfvhrrdg
kgeiyylvnqqeaaqsieahfrvtgkqpelwhpetgksepisyrisggetvvplhldgde
avfvvfrkaaardrvtlarqgeravatldgawqvafqadrgapasielarlepldksadp
gvkyfsgiatysrnfrvtgkygegrslwldlgrvgdlaqvsvngvdvgtawhapyrldig
kavrkgqntleirvantwvnrligdqqegaqkitwtamptyradaplrpsgligpvrlie
ettgghhhhhh

    Sequence, based on observed residues (ATOM records):
    >6q2fA (A:)
epsleqafkdppssarprvwwhwmngnitkdgirkdlewmkrvgigglqnfdanlqtpqi
vdhrlvymtpewkdafrfaaheadrldlelaiaaspgwsetggpwvkpqdglkklvwset
tlaggqrfvgrlasppgttgpfqtlhppvgvsyagevgvlafpvpdiaslpvpraldgag
nvlagkalvdadiaggvtlarvdgkapllrldyqrpvtvrsatvfvpnvrgaafagtles
sqdgktwtpikalelsnvpttisfapveaahfrlvlnppimvgqfelhsdalvdryetka
gfvmsrdyyalvgphdnvtgvdpdsvidltdklkadgtldwaapklpagqhwrvlrlgys
llgttnhpappeatglevdkfdgeavreylehyigmykdaagpdmvgkrgvralltdsie
vgeanwtprmleqfqrlrgydarpwlpaltgtlvgtreqsdrflydyrrtladllasehy
gtvadvahendlkvygealedhrpmlgddmamrshadipmaalwtfnrdegprqtliadm
kgaasvahlygqnlvaaesmtasmapwafapkdlkrfidlefvtgvnrpvihtsvhvpvd
dkkpglslaifgqyfnrqeswaemarpwvdyiarsslllqtgrnvadvayfygeeapltg
lygdepvadapvryaydyinfnaltellandgedlvapsgaryktiylggssshmtlaal
rklaalvvggatvvgkapiatpsntsaqegdltewsslvarlwpgsgdarvgkgrviasq
diesalqamdvapdftftgadagvkipfvhrrdgkgeiyylvnqqeaaqsieahfrvtgk
qpelwhpetgksepisyrisggetvvplhldgdeavfvvfrkaaardrvtlarqgerava
tldgawqvafqadrgapasielarlepldksadpgvkyfsgiatysrnfrvtgkygegrs
lwldlgrvgdlaqvsvngvdvgtawhapyrldigkavrkgqntleirvantwvnrligdq
qegaqkitwtamptyradaplrpsgligpvrliee