PDB entry 6py9

View 6py9 on RCSB PDB site
Description: Crystal structure of red kidney bean purple acid phosphatase in complex with adenosine diphosphate metavanadate
Class: METAL BINDING PROTEIN, Hydrolase
Keywords: Purple acid phosphatase, metallohydrolases, catalysis, phytase, ATPase, agricultural biotechnology, METAL BINDING PROTEIN, Hydrolase
Deposited on 2019-07-29, released 2020-04-29
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-07-29, with a file datestamp of 2020-07-04.
Experiment type: XRAY
Resolution: 2.2 Å
R-factor: N/A
AEROSPACI score: 0.32 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Fe(3+)-Zn(2+) purple acid phosphatase
    Species: Phaseolus vulgaris [TaxId:3885]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6py9a1, d6py9a2
  • Chain 'B':
    Compound: Fe(3+)-Zn(2+) purple acid phosphatase
    Species: Phaseolus vulgaris [TaxId:3885]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6py9b1, d6py9b2
  • Chain 'C':
    Compound: Fe(3+)-Zn(2+) purple acid phosphatase
    Species: Phaseolus vulgaris [TaxId:3885]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6py9c1, d6py9c2
  • Chain 'D':
    Compound: Fe(3+)-Zn(2+) purple acid phosphatase
    Species: Phaseolus vulgaris [TaxId:3885]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6py9d1, d6py9d2
  • Heterogens: AD9, ZN, FE, NAG, SO4, NA, EDO, GOL, PGE, P4J, CL, FLC, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6py9A (A:)
mgvvkgllalalvlnvvvvsnggkssnfvrktnknrdmpldsdvfrvppgynapqqvhit
qgdlvgramiiswvtmdepgssavrywsekngrkriakgkmstyrffnyssgfihhttir
klkyntkyyyevglrnttrrfsfitppqtgldvpytfgligdlgqsfdsnttlshyelsp
kkgqtvlfvgdlsyadrypnhdnvrwdtwgrftersvayqpwiwtagnheiefapeinet
epfkpfsyryhvpyeasqstspfwysikrasahiivlssysaygrgtpqytwlkkelrkv
krsetpwlivlmhsplynsynhhfmegeamrtkfeawfvkykvdvvfaghvhayerserv
sniaykitnglctpvkdqsapvyitigdagnygvidsnmiqpqpeysafreasfghgmfd
iknrthahfswnrnqdgvaveadsvwffnrhwypvddst

    Sequence, based on observed residues (ATOM records): (download) 
    >6py9A (A:)
nrdmpldsdvfrvppgynapqqvhitqgdlvgramiiswvtmdepgssavrywsekngrk
riakgkmstyrffnyssgfihhttirklkyntkyyyevglrnttrrfsfitppqtgldvp
ytfgligdlgqsfdsnttlshyelspkkgqtvlfvgdlsyadrypnhdnvrwdtwgrfte
rsvayqpwiwtagnheiefapeinetepfkpfsyryhvpyeasqstspfwysikrasahi
ivlssysaygrgtpqytwlkkelrkvkrsetpwlivlmhsplynsynhhfmegeamrtkf
eawfvkykvdvvfaghvhayerservsniaykitnglctpvkdqsapvyitigdagnygv
idsnmiqpqpeysafreasfghgmfdiknrthahfswnrnqdgvaveadsvwffnrhwyp
vdds

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6py9B (B:)
mgvvkgllalalvlnvvvvsnggkssnfvrktnknrdmpldsdvfrvppgynapqqvhit
qgdlvgramiiswvtmdepgssavrywsekngrkriakgkmstyrffnyssgfihhttir
klkyntkyyyevglrnttrrfsfitppqtgldvpytfgligdlgqsfdsnttlshyelsp
kkgqtvlfvgdlsyadrypnhdnvrwdtwgrftersvayqpwiwtagnheiefapeinet
epfkpfsyryhvpyeasqstspfwysikrasahiivlssysaygrgtpqytwlkkelrkv
krsetpwlivlmhsplynsynhhfmegeamrtkfeawfvkykvdvvfaghvhayerserv
sniaykitnglctpvkdqsapvyitigdagnygvidsnmiqpqpeysafreasfghgmfd
iknrthahfswnrnqdgvaveadsvwffnrhwypvddst

    Sequence, based on observed residues (ATOM records): (download) 
    >6py9B (B:)
nrdmpldsdvfrvppgynapqqvhitqgdlvgramiiswvtmdepgssavrywsekngrk
riakgkmstyrffnyssgfihhttirklkyntkyyyevglrnttrrfsfitppqtgldvp
ytfgligdlgqsfdsnttlshyelspkkgqtvlfvgdlsyadrypnhdnvrwdtwgrfte
rsvayqpwiwtagnheiefapeinetepfkpfsyryhvpyeasqstspfwysikrasahi
ivlssysaygrgtpqytwlkkelrkvkrsetpwlivlmhsplynsynhhfmegeamrtkf
eawfvkykvdvvfaghvhayerservsniaykitnglctpvkdqsapvyitigdagnygv
idsnmiqpqpeysafreasfghgmfdiknrthahfswnrnqdgvaveadsvwffnrhwyp
vddst

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >6py9C (C:)
mgvvkgllalalvlnvvvvsnggkssnfvrktnknrdmpldsdvfrvppgynapqqvhit
qgdlvgramiiswvtmdepgssavrywsekngrkriakgkmstyrffnyssgfihhttir
klkyntkyyyevglrnttrrfsfitppqtgldvpytfgligdlgqsfdsnttlshyelsp
kkgqtvlfvgdlsyadrypnhdnvrwdtwgrftersvayqpwiwtagnheiefapeinet
epfkpfsyryhvpyeasqstspfwysikrasahiivlssysaygrgtpqytwlkkelrkv
krsetpwlivlmhsplynsynhhfmegeamrtkfeawfvkykvdvvfaghvhayerserv
sniaykitnglctpvkdqsapvyitigdagnygvidsnmiqpqpeysafreasfghgmfd
iknrthahfswnrnqdgvaveadsvwffnrhwypvddst

    Sequence, based on observed residues (ATOM records): (download) 
    >6py9C (C:)
nrdmpldsdvfrvppgynapqqvhitqgdlvgramiiswvtmdepgssavrywsekngrk
riakgkmstyrffnyssgfihhttirklkyntkyyyevglrnttrrfsfitppqtgldvp
ytfgligdlgqsfdsnttlshyelspkkgqtvlfvgdlsyadrypnhdnvrwdtwgrfte
rsvayqpwiwtagnheiefapeinetepfkpfsyryhvpyeasqstspfwysikrasahi
ivlssysaygrgtpqytwlkkelrkvkrsetpwlivlmhsplynsynhhfmegeamrtkf
eawfvkykvdvvfaghvhayerservsniaykitnglctpvkdqsapvyitigdagnygv
idsnmiqpqpeysafreasfghgmfdiknrthahfswnrnqdgvaveadsvwffnrhwyp
vdd

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >6py9D (D:)
mgvvkgllalalvlnvvvvsnggkssnfvrktnknrdmpldsdvfrvppgynapqqvhit
qgdlvgramiiswvtmdepgssavrywsekngrkriakgkmstyrffnyssgfihhttir
klkyntkyyyevglrnttrrfsfitppqtgldvpytfgligdlgqsfdsnttlshyelsp
kkgqtvlfvgdlsyadrypnhdnvrwdtwgrftersvayqpwiwtagnheiefapeinet
epfkpfsyryhvpyeasqstspfwysikrasahiivlssysaygrgtpqytwlkkelrkv
krsetpwlivlmhsplynsynhhfmegeamrtkfeawfvkykvdvvfaghvhayerserv
sniaykitnglctpvkdqsapvyitigdagnygvidsnmiqpqpeysafreasfghgmfd
iknrthahfswnrnqdgvaveadsvwffnrhwypvddst

    Sequence, based on observed residues (ATOM records): (download) 
    >6py9D (D:)
nrdmpldsdvfrvppgynapqqvhitqgdlvgramiiswvtmdepgssavrywsekngrk
riakgkmstyrffnyssgfihhttirklkyntkyyyevglrnttrrfsfitppqtgldvp
ytfgligdlgqsfdsnttlshyelspkkgqtvlfvgdlsyadrypnhdnvrwdtwgrfte
rsvayqpwiwtagnheiefapeinetepfkpfsyryhvpyeasqstspfwysikrasahi
ivlssysaygrgtpqytwlkkelrkvkrsetpwlivlmhsplynsynhhfmegeamrtkf
eawfvkykvdvvfaghvhayerservsniaykitnglctpvkdqsapvyitigdagnygv
idsnmiqpqpeysafreasfghgmfdiknrthahfswnrnqdgvaveadsvwffnrhwyp
vdd