PDB entry 6py2

View 6py2 on RCSB PDB site
Description: hla-tcr complex
Deposited on 2019-07-28, released 2020-01-15
The last revision was dated 2020-07-29, with a file datestamp of 2020-07-04.
Experiment type: XRAY
Resolution: 2.83 Å
R-factor: N/A
AEROSPACI score: 0.22 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: HLA class II histocompatibility antigen DQ alpha chain
    Species: Homo sapiens [TaxId:9606]
    Gene: HLA-DQA1
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: HLA class II histocompatibility antigen DQ beta chain
    Species: Homo sapiens [TaxId:9606]
    Gene: HLA-DQB1
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: DQ2.2-glut-L1
    Species: Triticum aestivum, synthetic [TaxId:4565]
    Database cross-references and differences (RAF-indexed):
    • PDB 6PY2 (0-11)
  • Chain 'D':
    Compound: T-cell receptor, T594, alpha chain,T-cell receptor, T594, alpha chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6PY2 (Start-112)
    • Uniprot K7N5N2 (113-End)
  • Chain 'E':
    Compound: T-cell receptor, T594, beta chain,T-cell receptor, T594, beta chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6PY2 (Start-114)
    • Uniprot K7N5M4 (115-End)
  • Heterogens: NAG, GOL, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6py2A (A:)
milnkalmlgalalttvmspcggedivadhvasygvnlyqsygpsgqfthefdgdeefyv
dlerketvwklplfhrlrfdpqfaltniavlkhnlnilikrsnstaatnevpevtvfsks
pvtlgqpntliclvdnifppvvnitwlsnghsvtegvsetsflsksdhsffkisyltflp
sadeiydckvehwgldepllkhwepeipapmseltetvvcalglsvglvgivvgtvliir
glrsvgasrhqgpl

    Sequence, based on observed residues (ATOM records):
    >6py2A (A:)
ivadhvasygvnlyqsygpsgqfthefdgdeefyvdlerketvwklplfhrlrfdpqfal
tniavlkhnlnilikrsnstaatnevpevtvfskspvtlgqpntliclvdnifppvvnit
wlsnghsvtegvsetsflsksdhsffkisyltflpsadeiydckvehwgldepllkhwep
ei

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6py2B (B:)
mswkkalripgglraatvtlmlsmlstpvaegrdspedfvyqfkgmcyftngtervrlvs
rsiynreeivrfdsdvgefravtllglpaaeywnsqkdilerkraavdrvcrhnyqlelr
ttlqrrveptvtispsrtealnhhnllvcsvtdfypaqikvrwfrngqeetagvvstpli
rngdwtfqilvmlemtpqrgdvytchvehpslqspitvewraqsesaqskmlsgiggfvl
gliflglgliihhrsqkgllh

    Sequence, based on observed residues (ATOM records):
    >6py2B (B:)
spedfvyqfkgmcyftngtervrlvsrsiynreeivrfdsdvgefravtllglpaaeywn
sqkdilerkraavdrvcrhnyqlelrttlqrrveptvtispsllvcsvtdfypaqikvrw
frngqeetagvvstplirngdwtfqilvmlemtpqrgdvytchvehpslqspitvewr

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records:
    >6py2C (C:)
apfseqeqpvlg

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6py2D (D:)
mnsvtqmegpvtlseeafltinctytatgypslfwyvqypgeglqlllkatkaddkgsnk
gfeatyrkettsfhlekgsvqvsdsavyfcaspqggseklvfgkgtkltvnpyiqnpdpa
vyqlrdskssdksvclftdfdsqtnvsqskdsdvyitdkcvldmrsmdfksnsavawsnk
sdfacanafnnsiipedtffpspess

    Sequence, based on observed residues (ATOM records):
    >6py2D (D:)
nsvtqmegpvtlseeafltinctytatgypslfwyvqypgeglqlllkatkaddkgsnkg
featyrkettsfhlekgsvqvsdsavyfcaspqggseklvfgkgtkltvnpyiqnpdpav
yqlrdskssdksvclftdfdsqtnvsqskdsdvyitdkcvldmrsmdfksnsavawsdfa
canafnnsiip

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6py2E (E:)
mgvaqsprykiiekrqsvafwcnpisghatlywyqqilgqgpklliqfqnngvvddsqlp
kdrfsaerlkgvdstlkiqpakledsavylcasssggwgggteaffgqgtrltvvedlkn
vfppevavfepseaeishtqkatlvclatgfypdhvelswwvngkevhsgvctdpqplke
qpalndsryalssrlrvsatfwqnprnhfrcqvqfyglsendewtqdrakpvtqivsaea
wgrad

    Sequence, based on observed residues (ATOM records):
    >6py2E (E:)
gvaqsprykiiekrqsvafwcnpisghatlywyqqilgqgpklliqfqnngvvddsqlpk
drfsaerlkgvdstlkiqpakledsavylcasssggwgggteaffgqgtrltvvedlknv
fppevavfepseaeishtqkatlvclatgfypdhvelswwvngkevhsgvctdpqplkeq
palndsryalssrlrvsatfwqnprnhfrcqvqfyglsendewtqdrakpvtqivsaeaw
gra