SCOPe 2.08: Structural Classification of Proteins

PDB entry 6ptv

View 6ptv on RCSB PDB site
Description: crystal structure of a dnan sliding clamp (dna polymerase iii subunit beta) from rickettsia rickettsii bound to griselimycin
Deposited on 2019-07-16, released 2019-08-07
The last revision was dated 2019-08-07, with a file datestamp of 2019-08-02.
Experiment type: XRAY
Resolution: 1.85 Å
R-factor: N/A
AEROSPACI score: 0.35 (click here for full SPACI score report)

Chains and heterogens:

Chain 'A':
Compound: Beta sliding clamp
Species: Rickettsia rickettsii (strain Sheila Smith) [TaxId:392021]
Gene: A1G_03290
Database cross-references and differences (RAF-indexed):
- Uniprot A0A0H3AWV3 (8-386)
  - expression tag (7)
  - conflict (380)
  - conflict (382)
Chain 'B':
Compound: Beta sliding clamp
Species: Rickettsia rickettsii (strain Sheila Smith) [TaxId:392021]
Gene: A1G_03290
Database cross-references and differences (RAF-indexed):
- Uniprot A0A0H3AWV3 (8-386)
  - expression tag (6-7)
  - conflict (380)
  - conflict (382)
Chain 'C':
Compound: Beta sliding clamp
Species: Rickettsia rickettsii (strain Sheila Smith) [TaxId:392021]
Gene: A1G_03290
Database cross-references and differences (RAF-indexed):
- Uniprot A0A0H3AWV3 (8-386)
  - expression tag (7)
  - conflict (380)
  - conflict (382)
Chain 'D':
Compound: Beta sliding clamp
Species: Rickettsia rickettsii (strain Sheila Smith) [TaxId:392021]
Gene: A1G_03290
Database cross-references and differences (RAF-indexed):
- Uniprot A0A0H3AWV3 (8-386)
  - expression tag (6-7)
  - conflict (380)
  - conflict (382)
Chain 'X':
Compound: ace-mva-mp8-nzc-leu-mp8-leu-mva-pro-mlu-gly
Species: STREPTOMYCES GRISEUS, synthetic [TaxId:1911]
Database cross-references and differences (RAF-indexed):
- PDB 6PTV (Start-9)
Chain 'Y':
Compound: ace-mva-mp8-nzc-leu-mp8-leu-mva-pro-mlu-gly
Species: STREPTOMYCES GRISEUS, synthetic [TaxId:1911]
Database cross-references and differences (RAF-indexed):
- PDB 6PTV (Start-9)
Heterogens: MPD, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

Chain 'A':
Sequence, based on SEQRES records:

>6ptvA (A:)
mahhhhhhmlklivetktlvqslgfassvvekrnvipeyaniklsaqdgnlelsstnmdl
ylsqkiavqvvsegectvstktlndivrklpdseltltdlgttgleikgknckfnlftlp
vssfpamdsinpeasfkisctdfakiiestkfsisldetrynlngvylhikdkefcsast
dghrlsiswvtlekqiknfgvilpqksaeeilkivkdpkninedieillnsnkikficne
ntimlsklidgtfpdystfipessssklvinrkmfadsieriaiitvekfravklslsre
tleisavgeargnakevinssqdkesfyeynsdeslaigfnpqyledvlkavksdlvely
fsdvsapvlikfpenpkdifivlpvkv

Sequence, based on observed residues (ATOM records):

>6ptvA (A:)
hmlklivetktlvqslgfassvvekrnvipeyaniklsaqdgnlelsstnmdlylsqkia
vqvvsegectvstktlndivrklpdseltltdlgttgleikgknckfnlftlpvssfpam
dsinpeasfkisctdfakiiestkfsisldetrynlngvylhikdkefcsastdghrlsi
swvtlekqiknfgvilpqksaeeilkivkdpkninedieillnsnkikficnentimlsk
lidgtfpdystfipessssklvinrkmfadsieriaiitvekfravklslsretleisav
geargnakevinssqdkesfyeynsdeslaigfnpqyledvlkavksdlvelyfsdvsap
vlikfpenpkdifivlpvkv

Chain 'B':
Sequence, based on SEQRES records:

>6ptvB (B:)
mahhhhhhmlklivetktlvqslgfassvvekrnvipeyaniklsaqdgnlelsstnmdl
ylsqkiavqvvsegectvstktlndivrklpdseltltdlgttgleikgknckfnlftlp
vssfpamdsinpeasfkisctdfakiiestkfsisldetrynlngvylhikdkefcsast
dghrlsiswvtlekqiknfgvilpqksaeeilkivkdpkninedieillnsnkikficne
ntimlsklidgtfpdystfipessssklvinrkmfadsieriaiitvekfravklslsre
tleisavgeargnakevinssqdkesfyeynsdeslaigfnpqyledvlkavksdlvely
fsdvsapvlikfpenpkdifivlpvkv

Sequence, based on observed residues (ATOM records):

>6ptvB (B:)
hhmlklivetktlvqslgfassvvepeyaniklsaqdgnlelsstnmdlylsqkiavqvv
segectvstktlndivrklpdseltltdlgttgleikgknckfnlftlpvssfpamdsin
peasfkisctdfakiiestkfsisldetrynlngvylhikdkefcsastdghrlsiswvt
lekqiknfgvilpqksaeeilkivkdpkninedieillnsnkikficnentimlsklidg
tfpdystfipessssklvinrkmfadsieriaiitvekfravklslsretleisavgear
gnakevinssqdkesfyeynsdeslaigfnpqyledvlkavksdlvelyfsdvsapvlik
fpenpkdifivlpvkv

Chain 'C':
Sequence, based on SEQRES records:

>6ptvC (C:)
mahhhhhhmlklivetktlvqslgfassvvekrnvipeyaniklsaqdgnlelsstnmdl
ylsqkiavqvvsegectvstktlndivrklpdseltltdlgttgleikgknckfnlftlp
vssfpamdsinpeasfkisctdfakiiestkfsisldetrynlngvylhikdkefcsast
dghrlsiswvtlekqiknfgvilpqksaeeilkivkdpkninedieillnsnkikficne
ntimlsklidgtfpdystfipessssklvinrkmfadsieriaiitvekfravklslsre
tleisavgeargnakevinssqdkesfyeynsdeslaigfnpqyledvlkavksdlvely
fsdvsapvlikfpenpkdifivlpvkv

Sequence, based on observed residues (ATOM records):

>6ptvC (C:)
hmlklivetktlvqslgfassvveeyaniklsaqdgnlelsstnmdlylsqkiavqvvse
gectvstktlndivrklpdseltltdlgttgleikgknckfnlftlpvssfpamdsinpe
asfkisctdfakiiestkfsisldetrynlngvylhikdkefcsastdghrlsiswvtle
kqiknfgvilpqksaeeilkivkdpkninedieillnsnkikficnentimlsklidgtf
pdystfipessssklvinrkmfadsieriaiitvekfravklslsretleisavgeargn
akevinssqdkesfyeynsdeslaigfnpqyledvlkavksdlvelyfsdvsapvlikfp
enpkdifivlpvkv

Chain 'D':
Sequence, based on SEQRES records:

>6ptvD (D:)
mahhhhhhmlklivetktlvqslgfassvvekrnvipeyaniklsaqdgnlelsstnmdl
ylsqkiavqvvsegectvstktlndivrklpdseltltdlgttgleikgknckfnlftlp
vssfpamdsinpeasfkisctdfakiiestkfsisldetrynlngvylhikdkefcsast
dghrlsiswvtlekqiknfgvilpqksaeeilkivkdpkninedieillnsnkikficne
ntimlsklidgtfpdystfipessssklvinrkmfadsieriaiitvekfravklslsre
tleisavgeargnakevinssqdkesfyeynsdeslaigfnpqyledvlkavksdlvely
fsdvsapvlikfpenpkdifivlpvkv

Sequence, based on observed residues (ATOM records):

>6ptvD (D:)
hhmlklivetktlvqslgfassvvekrnvipeyaniklsaqdgnlelsstnmdlylsqki
avqvvsegectvstktlndivrklpdseltltdlgttgleikgknckfnlftlpvssfpa
mdsinpeasfkisctdfakiiestkfsisldetrynlngvylhikdkefcsastdghrls
iswvtlekqiknfgvilpqksaeeilkivkdpkninedieillnsnkikficnentimls
klidgtfpdystfipessssklvinrkmfadsieriaiitvekfravklslsretleisa
vgeargnakevinssqdkesfyeynsdeslaigfnpqyledvlkavksdlvelyfsdvsa
pvlikfpenpkdifivlpvkv

Chain 'X':
Sequence; same for both SEQRES and ATOM records:
```
>6ptvX (X:)
vxxlxlvpxg
```
Chain 'Y':
Sequence; same for both SEQRES and ATOM records:
```
>6ptvY (Y:)
vxxlxlvpxg
```