PDB entry 6ptr

View 6ptr on RCSB PDB site
Description: crystal structure of a dnan sliding clamp (dna polymerase iii subunit beta) from bartonella birtlesii bound to griselimycin
Deposited on 2019-07-16, released 2019-08-07
The last revision was dated 2019-08-07, with a file datestamp of 2019-08-02.
Experiment type: XRAY
Resolution: 1.75 Å
R-factor: N/A
AEROSPACI score: 0.38 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Beta sliding clamp
    Species: Bartonella birtlesii LL-WM9 [TaxId:1094552]
    Gene: ME7_01154
    Database cross-references and differences (RAF-indexed):
    • Uniprot J1IY24 (8-380)
      • expression tag (7)
  • Chain 'B':
    Compound: Beta sliding clamp
    Species: Bartonella birtlesii LL-WM9 [TaxId:1094552]
    Gene: ME7_01154
    Database cross-references and differences (RAF-indexed):
    • Uniprot J1IY24 (8-380)
      • expression tag (6-7)
  • Chain 'X':
    Compound: ace-mva-mp8-nzc-leu-mp8-leu-mva-pro-mlu-gly
    Species: STREPTOMYCES GRISEUS, synthetic [TaxId:1911]
    Database cross-references and differences (RAF-indexed):
    • PDB 6PTR (Start-9)
  • Chain 'Y':
    Compound: ace-mva-mp8-nzc-leu-mp8-leu-mva-pro-mlu-gly
    Species: STREPTOMYCES GRISEUS, synthetic [TaxId:1911]
    Database cross-references and differences (RAF-indexed):
    • PDB 6PTR (Start-9)
  • Heterogens: EDO, IOD, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6ptrA (A:)
mahhhhhhmritvdrsqffkslgrvhrvverrntvpilsnvlidaengsvqlkatdldle
vtesftvniekagaitvpayllydivrklpdgseivlsvdenqasamsivsgcthfqlqc
lpkidfpeslpgqfgcrfflsasklkhlldctqfaisteetryylngiyfhivhddvlkl
rlvatdghrlaqvdmeapsgvdgmpgviiprkavgelqkllseeidgdvcielsetkirf
slgsvvftsklvdgtfpdyqrviplgndrklivnrqdfssavdrvstisndrgravklti
ehgqlklvvnnpdsgsaedqlaatytsepleigfnsrylldiagqlssdemvfmlsdava
palirdnnnaevlyvlmpvrv

    Sequence, based on observed residues (ATOM records):
    >6ptrA (A:)
hmritvdrsqffkslgrvhrvverrntvpilsnvlidaengsvqlkatdldlevtesftv
niekagaitvpayllydivrklpdgseivlsvdeamsivsgcthfqlqclpkidfpeslp
gqfgcrfflsasklkhlldctqfaisteetryylngiyfhivhddvlklrlvatdghrla
qvdmeapsgvdgmpgviiprkavgelqkllseeidgdvcielsetkirfslgsvvftskl
vdgtfpdyqrviplgndrklivnrqdfssavdrvstisndrgravkltiehgqlklvvnn
pdsgsaedqlaatytsepleigfnsrylldiagqlssdemvfmlsdavapalirdnnnae
vlyvlmpvrv

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6ptrB (B:)
mahhhhhhmritvdrsqffkslgrvhrvverrntvpilsnvlidaengsvqlkatdldle
vtesftvniekagaitvpayllydivrklpdgseivlsvdenqasamsivsgcthfqlqc
lpkidfpeslpgqfgcrfflsasklkhlldctqfaisteetryylngiyfhivhddvlkl
rlvatdghrlaqvdmeapsgvdgmpgviiprkavgelqkllseeidgdvcielsetkirf
slgsvvftsklvdgtfpdyqrviplgndrklivnrqdfssavdrvstisndrgravklti
ehgqlklvvnnpdsgsaedqlaatytsepleigfnsrylldiagqlssdemvfmlsdava
palirdnnnaevlyvlmpvrv

    Sequence, based on observed residues (ATOM records):
    >6ptrB (B:)
hhmritvdrsqffkslgrvhrvverrntvpilsnvlidaengsvqlkatdldlevtesft
vniekagaitvpayllydivrklpdgseivlsvdesamsivsgcthfqlqclpkidfpes
lpgqfgcrfflsasklkhlldctqfaisteetryylngiyfhivhddvlklrlvatdghr
laqvdmeapsgvdgmpgviiprkavgelqkllseeidgdvcielsetkirfslgsvvfts
klvdgtfpdyqrviplgndrklivnrqdfssavdrvstisndrgravkltiehgqlklvv
nnpdsgsaedqlaatytsepleigfnsrylldiagqlssdemvfmlsdavapalirdnnn
aevlyvlmpvrv

  • Chain 'X':
    Sequence; same for both SEQRES and ATOM records:
    >6ptrX (X:)
vxxlxlvpxg

  • Chain 'Y':
    Sequence; same for both SEQRES and ATOM records:
    >6ptrY (Y:)
vxxlxlvpxg