PDB entry 6prm

View 6prm on RCSB PDB site
Description: crystal structure of apo pss1_19b
Deposited on 2019-07-10, released 2019-09-25
The last revision was dated 2020-01-15, with a file datestamp of 2020-01-10.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: N/A
AEROSPACI score: 0.21 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: exo-4S-kappa carrageenan S1 sulfatase
    Species: Pseudoalteromonas fuliginea [TaxId:1872678]
    Gene: EU509_08890
    Database cross-references and differences (RAF-indexed):
    • PDB 6PRM (Start-468)
  • Chain 'B':
    Compound: exo-4S-kappa carrageenan S1 sulfatase
    Species: Pseudoalteromonas fuliginea [TaxId:1872678]
    Gene: EU509_08890
    Database cross-references and differences (RAF-indexed):
    • PDB 6PRM (Start-468)
  • Chain 'C':
    Compound: exo-4S-kappa carrageenan S1 sulfatase
    Species: Pseudoalteromonas fuliginea [TaxId:1872678]
    Gene: EU509_08890
    Database cross-references and differences (RAF-indexed):
    • PDB 6PRM (Start-468)
  • Chain 'D':
    Compound: exo-4S-kappa carrageenan S1 sulfatase
    Species: Pseudoalteromonas fuliginea [TaxId:1872678]
    Gene: EU509_08890
    Database cross-references and differences (RAF-indexed):
    • PDB 6PRM (Start-468)
  • Heterogens: CA, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6prmA (A:)
mgsshhhhhhssglvprgshmaskpnivlifaddagfgdfgfqgstqlktpnldklaqsg
vrftqgyvsdstcgpsraglmtgkyqqrfgyeeinvpgfmsgnsalkgadmglpldqktm
gdylkeqgyktavfgkwhlgdadrfhplkrgfdtflgfrggdrsyfnyseqemkngnkhf
fdkklerdfgnyeepkeyltdvlgkeaakyieqnkdepffiylafnavhtplesdpkdla
kfpnltgkrkelaamtlgldrasgyvldklkelglddntivvfsndnggpsdknasnnap
lagtksnqleggirvpfliswpkhikpgstydypvstldllptfysaakgkalgsdidgv
dllpyiqgentarphkvmywkkenravirdndwklirypdrpaelydlssdiseqtdlaa
knpervktmfkslfeweltlerprwllkrkyekydidrmdkyrlpatqp

    Sequence, based on observed residues (ATOM records):
    >6prmA (A:)
skpnivlifaddagfgdfgfqgstqlktpnldklaqsgvrftqgyvsdstcgpsraglmt
gkyqqrfgyeeinvpgfmsgnsalkgadmglpldqktmgdylkeqgyktavfgkwhlgda
drfhplkrgfdtflgfrggdrsyfnyseqemkngnkhffdkklerdfgnyeepkeyltdv
lgkeaakyieqnkdepffiylafnavhtplesdpkdlakfpnltgkrkelaamtlgldra
sgyvldklkelglddntivvfsndnggpsdknasnnaplagtksnqleggirvpfliswp
khikpgstydypvstldllptfysaakgkalgsdidgvdllpyiqgentarphkvmywkk
enravirdndwklirypdrpaelydlssdiseqtdlaaknpervktmfkslfeweltler
prwllkrkyekydidrmdkyrlpatqp

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6prmB (B:)
mgsshhhhhhssglvprgshmaskpnivlifaddagfgdfgfqgstqlktpnldklaqsg
vrftqgyvsdstcgpsraglmtgkyqqrfgyeeinvpgfmsgnsalkgadmglpldqktm
gdylkeqgyktavfgkwhlgdadrfhplkrgfdtflgfrggdrsyfnyseqemkngnkhf
fdkklerdfgnyeepkeyltdvlgkeaakyieqnkdepffiylafnavhtplesdpkdla
kfpnltgkrkelaamtlgldrasgyvldklkelglddntivvfsndnggpsdknasnnap
lagtksnqleggirvpfliswpkhikpgstydypvstldllptfysaakgkalgsdidgv
dllpyiqgentarphkvmywkkenravirdndwklirypdrpaelydlssdiseqtdlaa
knpervktmfkslfeweltlerprwllkrkyekydidrmdkyrlpatqp

    Sequence, based on observed residues (ATOM records):
    >6prmB (B:)
skpnivlifaddagfgdfgfqgstqlktpnldklaqsgvrftqgyvsdstcgpsraglmt
gkyqqrfgyeeinvpgfmsgnsalkgadmglpldqktmgdylkeqgyktavfgkwhlgda
drfhplkrgfdtflgfrggdrsyfnyseqemkngnkhffdkklerdfgnyeepkeyltdv
lgkeaakyieqnkdepffiylafnavhtplesdpkdlakfpnltgkrkelaamtlgldra
sgyvldklkelglddntivvfsndnggpsdknasnnaplagtksnqleggirvpfliswp
khikpgstydypvstldllptfysaakgkalgsdidgvdllpyiqgentarphkvmywkk
enravirdndwklirypdrpaelydlssdiseqtdlaaknpervktmfkslfeweltler
prwllkrkyekydidrmdkyrlpatqp

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6prmC (C:)
mgsshhhhhhssglvprgshmaskpnivlifaddagfgdfgfqgstqlktpnldklaqsg
vrftqgyvsdstcgpsraglmtgkyqqrfgyeeinvpgfmsgnsalkgadmglpldqktm
gdylkeqgyktavfgkwhlgdadrfhplkrgfdtflgfrggdrsyfnyseqemkngnkhf
fdkklerdfgnyeepkeyltdvlgkeaakyieqnkdepffiylafnavhtplesdpkdla
kfpnltgkrkelaamtlgldrasgyvldklkelglddntivvfsndnggpsdknasnnap
lagtksnqleggirvpfliswpkhikpgstydypvstldllptfysaakgkalgsdidgv
dllpyiqgentarphkvmywkkenravirdndwklirypdrpaelydlssdiseqtdlaa
knpervktmfkslfeweltlerprwllkrkyekydidrmdkyrlpatqp

    Sequence, based on observed residues (ATOM records):
    >6prmC (C:)
skpnivlifaddagfgdfgfqgstqlktpnldklaqsgvrftqgyvsdstcgpsraglmt
gkyqqrfgyeeinvpgfmsgnsalkgadmglpldqktmgdylkeqgyktavfgkwhlgda
drfhplkrgfdtflgfrggdrsyfnyseqemkngnkhffdkklerdfgnyeepkeyltdv
lgkeaakyieqnkdepffiylafnavhtplesdpkdlakfpnltgkrkelaamtlgldra
sgyvldklkelglddntivvfsndnggpsdknasnnaplagtksnqleggirvpfliswp
khikpgstydypvstldllptfysaakgkalgsdidgvdllpyiqgentarphkvmywkk
enravirdndwklirypdrpaelydlssdiseqtdlaaknpervktmfkslfeweltler
prwllkrkyekydidrmdkyrlpatqp

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6prmD (D:)
mgsshhhhhhssglvprgshmaskpnivlifaddagfgdfgfqgstqlktpnldklaqsg
vrftqgyvsdstcgpsraglmtgkyqqrfgyeeinvpgfmsgnsalkgadmglpldqktm
gdylkeqgyktavfgkwhlgdadrfhplkrgfdtflgfrggdrsyfnyseqemkngnkhf
fdkklerdfgnyeepkeyltdvlgkeaakyieqnkdepffiylafnavhtplesdpkdla
kfpnltgkrkelaamtlgldrasgyvldklkelglddntivvfsndnggpsdknasnnap
lagtksnqleggirvpfliswpkhikpgstydypvstldllptfysaakgkalgsdidgv
dllpyiqgentarphkvmywkkenravirdndwklirypdrpaelydlssdiseqtdlaa
knpervktmfkslfeweltlerprwllkrkyekydidrmdkyrlpatqp

    Sequence, based on observed residues (ATOM records):
    >6prmD (D:)
kpnivlifaddagfgdfgfqgstqlktpnldklaqsgvrftqgyvsdstcgpsraglmtg
kyqqrfgyeeinvpgfmsgnsalkgadmglpldqktmgdylkeqgyktavfgkwhlgdad
rfhplkrgfdtflgfrggdrsyfnyseqemkngnkhffdkklerdfgnyeepkeyltdvl
gkeaakyieqnkdepffiylafnavhtplesdpkdlakfpnltgkrkelaamtlgldras
gyvldklkelglddntivvfsndnggpsdknasnnaplagtksnqleggirvpfliswpk
hikpgstydypvstldllptfysaakgkalgsdidgvdllpyiqgentarphkvmywkke
nravirdndwklirypdrpaelydlssdiseqtdlaaknpervktmfkslfeweltlerp
rwllkrkyekydidrmdkyrlpatqp