PDB entry 6pqy

View 6pqy on RCSB PDB site
Description: cryo-em structure of hztransib/tir dna transposon end complex (tec)
Deposited on 2019-07-10, released 2019-10-09
The last revision was dated 2019-12-18, with a file datestamp of 2019-12-13.
Experiment type: EM
Resolution: 4.2 Å
R-factor: N/A
AEROSPACI score: 0.02 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Putative DNA-mediated transposase
    Species: Helicoverpa zea [TaxId:7113]
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: DNA (5'-d(p*cp*ap*cp*gp*gp*tp*gp*gp*ap*tp*cp*gp*ap*ap*ap*a)-3')
    Species: Helicoverpa zea, synthetic [TaxId:7113]
  • Chain 'C':
    Compound: DNA (5'-d(p*tp*tp*tp*tp*cp*gp*ap*tp*cp*cp*ap*cp*cp*gp*tp*g)-3')
    Species: Helicoverpa zea, synthetic [TaxId:7113]
  • Chain 'D':
    Compound: Putative DNA-mediated transposase
    Species: Helicoverpa zea [TaxId:7113]
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: DNA (5'-d(p*cp*ap*cp*gp*gp*tp*gp*gp*ap*tp*cp*gp*ap*ap*ap*a)-3')
    Species: Helicoverpa zea, synthetic [TaxId:7113]
  • Chain 'F':
    Compound: DNA (5'-d(p*tp*tp*tp*tp*cp*gp*ap*tp*cp*cp*ap*cp*cp*gp*tp*g)-3')
    Species: Helicoverpa zea, synthetic [TaxId:7113]

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6pqyA (A:)
    kpapstifspekalglllslklskwqyitlrettiregskeiypsyykvqkaklqcyppk
    afvavtdssakialqalldltvnrifetirspdaiqnkqliliskwgfdgasnqsrykqn
    iesgqgdssifmtslvplkltadgdtvwvnpkpcspmycrpvqfsfvketkdvvinekta
    mddeiealvpskcqgheishklmmtmidgkictylseaksnaacylclakptemskldvi
    asktissgvyefglstlharinvmecllhiayrldfkkwsargeghqellhsrkkliqdr
    fkddlnllidivkqgsgttndgntarrffefpdktaaitgldedlirrfsvilqaitsge
    iidvpkfkeyarttaekyvelydwyymsstvhkllihggdiiaenaivpigslseeasea
    rnkdfrrfrehhsrkksrqasnedilnmliissdplisftrpkldahkrqtyfketvell
    qlqdqeaptefhhhhhh
    

    Sequence, based on observed residues (ATOM records):
    >6pqyA (A:)
    stifspekalglllslklskwqyitlrettiregskeiypsyykvqkaklqcyppkafva
    vtdssakialqalldltvnrifetirspdaiqnkqliliskwgfdgasnqsrykqgdssi
    fmtslvplkltadgdtvwvnpkpcspmycrpvqfsfvketkdvvinektamddeiealvp
    skcqgheishklmmtmidgkictylseaksnaacylclyefglstlharinvmecllhia
    yrldfkkwsargeghqellhsrkkliqdrfkddlnllidivkqgsgttndgntarrffef
    pdktaaitgldedlirrfsvilqaitsgeiidvpkfkeyarttaekyvelydwyymsstv
    hkllihggdiiaenaivpigslseeasearnkdfrrfrehhsrkksrqasnedilnmlii
    ssdplisftrpkldahkrqtyfketvellqlqdqeaptef
    

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6pqyD (D:)
    kpapstifspekalglllslklskwqyitlrettiregskeiypsyykvqkaklqcyppk
    afvavtdssakialqalldltvnrifetirspdaiqnkqliliskwgfdgasnqsrykqn
    iesgqgdssifmtslvplkltadgdtvwvnpkpcspmycrpvqfsfvketkdvvinekta
    mddeiealvpskcqgheishklmmtmidgkictylseaksnaacylclakptemskldvi
    asktissgvyefglstlharinvmecllhiayrldfkkwsargeghqellhsrkkliqdr
    fkddlnllidivkqgsgttndgntarrffefpdktaaitgldedlirrfsvilqaitsge
    iidvpkfkeyarttaekyvelydwyymsstvhkllihggdiiaenaivpigslseeasea
    rnkdfrrfrehhsrkksrqasnedilnmliissdplisftrpkldahkrqtyfketvell
    qlqdqeaptefhhhhhh
    

    Sequence, based on observed residues (ATOM records):
    >6pqyD (D:)
    stifspekalglllslklskwqyitlrettiregskeiypsyykvqkaklqcyppkafva
    vtdssakialqalldltvnrifetirspdaiqnkqliliskwgfdgasnqsrykqgdssi
    fmtslvplkltadgdtvwvnpkpcspmycrpvqfsfvketkdvvinektamddeiealvp
    skcqgheishklmmtmidgkictylseaksnaacylclyefglstlharinvmecllhia
    yrldfkkwsargeghqellhsrkkliqdrfkddlnllidivkqgsgttndgntarrffef
    pdktaaitgldedlirrfsvilqaitsgeiidvpkfkeyarttaekyvelydwyymsstv
    hkllihggdiiaenaivpigslseeasearnkdfrrfrehhsrkksrqasnedilnmlii
    ssdplisftrpkldahkrqtyfketvellqlqdqeaptef
    

  • Chain 'E':
    No sequence available.

  • Chain 'F':
    No sequence available.