PDB entry 6pqr

View 6pqr on RCSB PDB site
Description: cryo-em structure of hztransib/intact tir substrate dna pre-reaction complex (prc)
Deposited on 2019-07-09, released 2019-10-09
The last revision was dated 2019-12-18, with a file datestamp of 2019-12-13.
Experiment type: EM
Resolution: 3.4 Å
R-factor: N/A
AEROSPACI score: 0.08 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: DNA-mediated transposase
    Species: Helicoverpa zea [TaxId:7113]
    Database cross-references and differences (RAF-indexed):
    • Uniprot B0F0C5 (Start-490)
      • expression tag (491)
  • Chain 'B':
    Compound: DNA (5'-d(*cp*tp*ap*gp*ap*tp*cp*tp*cp*ap*cp*gp*gp*tp*gp*gp*ap*tp*cp*gp*ap*ap*ap*a)-3')
    Species: Helicoverpa zea, synthetic [TaxId:7113]
  • Chain 'C':
    Compound: DNA (5'-d(p*tp*tp*tp*tp*cp*gp*ap*tp*cp*cp*ap*cp*cp*gp*tp*gp*ap*gp*ap*tp*cp*tp*ap*g)-3')
    Species: Helicoverpa zea, synthetic [TaxId:7113]
  • Chain 'D':
    Compound: DNA-mediated transposase
    Species: Helicoverpa zea [TaxId:7113]
    Database cross-references and differences (RAF-indexed):
    • Uniprot B0F0C5 (Start-490)
      • expression tag (491)
  • Chain 'E':
    Compound: DNA (5'-d(*cp*tp*ap*gp*ap*tp*cp*tp*cp*ap*cp*gp*gp*tp*gp*gp*ap*tp*cp*gp*ap*ap*ap*a)-3')
    Species: Helicoverpa zea, synthetic [TaxId:7113]
  • Chain 'F':
    Compound: DNA (5'-d(p*tp*tp*tp*tp*cp*gp*ap*tp*cp*cp*ap*cp*cp*gp*tp*gp*ap*gp*ap*tp*cp*tp*ap*g)-3')
    Species: Helicoverpa zea, synthetic [TaxId:7113]
  • Heterogens: MG, ZN, K

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6pqrA (A:)
kpapstifspekalglllslklskwqyitlrettiregskeiypsyykvqkaklqcyppk
afvavtdssakialqalldltvnrifetirspdaiqnkqliliskwgfdgasnqsrykqn
iesgqgdssifmtslvplkltadgdtvwvnpkpcspmycrpvqfsfvketkdvvinekta
mddeiealvpskcqgheishklmmtmidgkictylseaksnaacylclakptemskldvi
asktissgvyefglstlharinvmecllhiayrldfkkwsargeghqellhsrkkliqdr
fkddlnllidivkqgsgttndgntarrffefpdktaaitgldedlirrfsvilqaitsge
iidvpkfkeyarttaekyvelydwyymsstvhkllihggdiiaenaivpigslseeasea
rnkdfrrfrehhsrkksrqasnedilnmliissdplisftrpkldahkrqtyfketvell
qlqdqeaptefhhhhhh

    Sequence, based on observed residues (ATOM records):
    >6pqrA (A:)
stifspekalglllslklskwqyitlrettiregskeiypsyykvqkaklqcyppkafva
vtdssakialqalldltvnrifetirspdaiqnkqliliskwgfdgasnqgdssifmtsl
vplkltadgdtvwvnpkpcspmycrpvqfsfvketkdvvinektamddeiealvpskcqg
heishklmmtmidgkictylseaksnaacylclldviasktissgvyefglstlarinvm
ecllhiayrldfkkwsargeghqellhsrkkliqdrfkddlnllidivkqgsgttndgnt
arrffefpdktaaitgldedlirrfsvilqaitsgeiidvpkfkeyarttaekyvelydw
yymsstvhkllihggdiiaenaivpigslseeasearnkdfrrfrehhsrkksrqasned
ilnmliissdplisftrpkldahkrqtyfketvellqlqdqeaptefh

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6pqrD (D:)
kpapstifspekalglllslklskwqyitlrettiregskeiypsyykvqkaklqcyppk
afvavtdssakialqalldltvnrifetirspdaiqnkqliliskwgfdgasnqsrykqn
iesgqgdssifmtslvplkltadgdtvwvnpkpcspmycrpvqfsfvketkdvvinekta
mddeiealvpskcqgheishklmmtmidgkictylseaksnaacylclakptemskldvi
asktissgvyefglstlharinvmecllhiayrldfkkwsargeghqellhsrkkliqdr
fkddlnllidivkqgsgttndgntarrffefpdktaaitgldedlirrfsvilqaitsge
iidvpkfkeyarttaekyvelydwyymsstvhkllihggdiiaenaivpigslseeasea
rnkdfrrfrehhsrkksrqasnedilnmliissdplisftrpkldahkrqtyfketvell
qlqdqeaptefhhhhhh

    Sequence, based on observed residues (ATOM records):
    >6pqrD (D:)
stifspekalglllslklskwqyitlrettiregskeiypsyykvqkaklqcyppkafva
vtdssakialqalldltvnrifetirspdaiqnkqliliskwgfdgasnqgdssifmtsl
vplkltadgdtvwvnpkpcspmycrpvqfsfvketkdvvinektamddeiealvpskcqg
heishklmmtmidgkictylseaksnaacylclldviasktissgvyefglstlarinvm
ecllhiayrldfkkwsargeghqellhsrkkliqdrfkddlnllidivkqgsgttndgnt
arrffefpdktaaitgldedlirrfsvilqaitsgeiidvpkfkeyarttaekyvelydw
yymsstvhkllihggdiiaenaivpigslseeasearnkdfrrfrehhsrkksrqasned
ilnmliissdplisftrpkldahkrqtyfketvellqlqdqeaptefh

  • Chain 'E':
    No sequence available.

  • Chain 'F':
    No sequence available.