PDB entry 6pqh

View 6pqh on RCSB PDB site
Description: crystal structure of asparagine-trna ligase from elizabethkingia sp. ccug 26117
Deposited on 2019-07-09, released 2019-07-31
The last revision was dated 2019-07-31, with a file datestamp of 2019-07-26.
Experiment type: XRAY
Resolution: 2 Å
R-factor: N/A
AEROSPACI score: 0.32 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Asparagine--tRNA ligase
    Species: Elizabethkingia sp. [TaxId:1939629]
    Gene: asnS
    Database cross-references and differences (RAF-indexed):
    • Uniprot X5KA67 (8-489)
      • conflict (486)
  • Chain 'B':
    Compound: Asparagine--tRNA ligase
    Species: Elizabethkingia sp. [TaxId:1939629]
    Gene: asnS
    Database cross-references and differences (RAF-indexed):
    • Uniprot X5KA67 (8-489)
      • expression tag (6-7)
      • conflict (486)
  • Chain 'C':
    Compound: Asparagine--tRNA ligase
    Species: Elizabethkingia sp. [TaxId:1939629]
    Gene: asnS
    Database cross-references and differences (RAF-indexed):
    • Uniprot X5KA67 (Start-489)
      • conflict (486)
  • Chain 'D':
    Compound: Asparagine--tRNA ligase
    Species: Elizabethkingia sp. [TaxId:1939629]
    Gene: asnS
    Database cross-references and differences (RAF-indexed):
    • Uniprot X5KA67 (8-489)
      • conflict (486)
  • Heterogens: EDO, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6pqhA (A:)
mahhhhhhmhkqtikevlenykkflhhditvygwvrafrsnrfialndgstinnlqivvd
fenfdenliknintasslkivgevvesqgagqtveiiakkiivlgdnfteelqntilqpk
khsleklreqahlrfrtnlfgavfrvrhavsfaihsffndrqffylntpvitgadaegag
emfgvtnfdldniprnedgaidytqdffgrktnltvsgqlegetaamglgriytfgptfr
aensnttrhlaefwmvepevafnnlednidlaedflkyviqyvldkckddlefldkrfae
eqkqkpekerakeglieklenvvakrfkrvsyteaidillnskenkkgkfvypvekwgad
lqseherylvekhfecpvvlfdypaeikafymrlnednktvaamdvlfpgigeiiggsqr
eerldvlkkkmddmhvdqeelwwyldtrkfgsvphsgfglglerlvlfvtgmtnirdvip
fprtpknaef

    Sequence, based on observed residues (ATOM records):
    >6pqhA (A:)
mhkqtikevlenykkflhhditvygwvrafrsnrfialndgstinnlqivvdfenfdenl
iknintasslkivgevvestveiiakkiivlgdnfteelqntilqpkkhsleklreqahl
rfrtnlfgavfrvrhavsfaihsffndrqffylntpvitgagemfgvtnfdldniprned
gaidytqdffgrktnltvsgqlegetaamglgriytfgptfraensnttrhlaefwmvep
evafnnlednidlaedflkyviqyvldkckddlefldkrfaeeqkqkpekerakegliek
lenvvakrfkrvsyteaidillnskenkkgkfvypvekwgadlqseherylvekhfecpv
vlfdypaeikafymrlnednktvaamdvlfpgigeiiggsqreerldvlkkkmddmhvdq
eelwwyldtrkfgsvphsgfglglerlvlfvtgmtnirdvipfprtpknaef

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6pqhB (B:)
mahhhhhhmhkqtikevlenykkflhhditvygwvrafrsnrfialndgstinnlqivvd
fenfdenliknintasslkivgevvesqgagqtveiiakkiivlgdnfteelqntilqpk
khsleklreqahlrfrtnlfgavfrvrhavsfaihsffndrqffylntpvitgadaegag
emfgvtnfdldniprnedgaidytqdffgrktnltvsgqlegetaamglgriytfgptfr
aensnttrhlaefwmvepevafnnlednidlaedflkyviqyvldkckddlefldkrfae
eqkqkpekerakeglieklenvvakrfkrvsyteaidillnskenkkgkfvypvekwgad
lqseherylvekhfecpvvlfdypaeikafymrlnednktvaamdvlfpgigeiiggsqr
eerldvlkkkmddmhvdqeelwwyldtrkfgsvphsgfglglerlvlfvtgmtnirdvip
fprtpknaef

    Sequence, based on observed residues (ATOM records):
    >6pqhB (B:)
hhmhkqtikevlenykkflhhditvygwvrafrsnrfialndgstinnlqivvdfenfde
nliknintasslkivgevvesqgagqtveiiakkiivlgdnfteelqntilqpkkhslek
lreqahlrfrtnlfgavfrvrhavsfaihsffndrqffylntpvitgagemfgvtnfdld
niprnedgaidytqdffgrktnltvsgqlegetaamglgriytfgptfraensnttrhla
efwmvepevafnnlednidlaedflkyviqyvldkckddlefldkrfaeeqkqkpekera
keglieklenvvakrfkrvsyteaidillnskenkkgkfvypvekwgadlqseherylve
khfecpvvlfdypaeikafymrlnednktvaamdvlfpgigeiiggsqreerldvlkkkm
ddmhvdqeelwwyldtrkfgsvphsgfglglerlvlfvtgmtnirdvipfprtpknaef

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6pqhC (C:)
mahhhhhhmhkqtikevlenykkflhhditvygwvrafrsnrfialndgstinnlqivvd
fenfdenliknintasslkivgevvesqgagqtveiiakkiivlgdnfteelqntilqpk
khsleklreqahlrfrtnlfgavfrvrhavsfaihsffndrqffylntpvitgadaegag
emfgvtnfdldniprnedgaidytqdffgrktnltvsgqlegetaamglgriytfgptfr
aensnttrhlaefwmvepevafnnlednidlaedflkyviqyvldkckddlefldkrfae
eqkqkpekerakeglieklenvvakrfkrvsyteaidillnskenkkgkfvypvekwgad
lqseherylvekhfecpvvlfdypaeikafymrlnednktvaamdvlfpgigeiiggsqr
eerldvlkkkmddmhvdqeelwwyldtrkfgsvphsgfglglerlvlfvtgmtnirdvip
fprtpknaef

    Sequence, based on observed residues (ATOM records):
    >6pqhC (C:)
hkqtikevlenykkflhhditvygwvrafrsnrfialndgstinnlqivvdfenfdenli
knintasslkivgevvestveiiakkiivlgdnfteelqntilqpkkhsleklreqahlr
frtnlfgavfrvrhavsfaihsffndrqffylntpvitgagemfgvtnfdldniprnedg
aidytqdffgrktnltvsgqlegetaamglgriytfgptfraensnttrhlaefwmvepe
vafnnlednidlaedflkyviqyvldkckddlefldkrfaeeqkqkpekerakegliekl
envvakrfkrvsyteaidillnskenkkgkfvypvekwgadlqseherylvekhfecpvv
lfdypaeikafymrlnednktvaamdvlfpgigeiiggsqreerldvlkkkmddmhvdqe
elwwyldtrkfgsvphsgfglglerlvlfvtgmtnirdvipfprtpknaef

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6pqhD (D:)
mahhhhhhmhkqtikevlenykkflhhditvygwvrafrsnrfialndgstinnlqivvd
fenfdenliknintasslkivgevvesqgagqtveiiakkiivlgdnfteelqntilqpk
khsleklreqahlrfrtnlfgavfrvrhavsfaihsffndrqffylntpvitgadaegag
emfgvtnfdldniprnedgaidytqdffgrktnltvsgqlegetaamglgriytfgptfr
aensnttrhlaefwmvepevafnnlednidlaedflkyviqyvldkckddlefldkrfae
eqkqkpekerakeglieklenvvakrfkrvsyteaidillnskenkkgkfvypvekwgad
lqseherylvekhfecpvvlfdypaeikafymrlnednktvaamdvlfpgigeiiggsqr
eerldvlkkkmddmhvdqeelwwyldtrkfgsvphsgfglglerlvlfvtgmtnirdvip
fprtpknaef

    Sequence, based on observed residues (ATOM records):
    >6pqhD (D:)
mhkqtikevlenykkflhhditvygwvrafrsnrfialndgstinnlqivvdfenfdenl
iknintasslkivgevvesqgagqtveiiakkiivlgdnfteelqntilqpkkhsleklr
eqahlrfrtnlfgavfrvrhavsfaihsffndrqffylntpvitgagemfgvtnfdldni
prnedgaidytqdffgrktnltvsgqlegetaamglgriytfgptfraensnttrhlaef
wmvepevafnnlednidlaedflkyviqyvldkckddlefldkrfaeeqkqkpekerake
glieklenvvakrfkrvsyteaidillnskenkkgkfvypvekwgadlqseherylvekh
fecpvvlfdypaeikafymrlnednktvaamdvlfpgigeiiggsqreerldvlkkkmdd
mhvdqeelwwyldtrkfgsvphsgfglglerlvlfvtgmtnirdvipfprtpknaef