PDB entry 6ppv

View 6ppv on RCSB PDB site
Description: structure of s. pombe lsm1-7 with rna, polyuridine with 3' guanosine
Deposited on 2019-07-08, released 2020-06-17
The last revision was dated 2020-09-30, with a file datestamp of 2020-09-25.
Experiment type: XRAY
Resolution: 2.05 Å
R-factor: N/A
AEROSPACI score: 0.37 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: U6 snRNA-associated Sm-like protein Lsm1
    Species: Schizosaccharomyces pombe (strain 972 / ATCC 24843) [TaxId:284812]
    Gene: lsm1, SPBC3D6.08c
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: u6 snrna-associated sm-like protein lsm2
    Species: Schizosaccharomyces pombe (strain 972 / ATCC 24843) [TaxId:284812]
    Gene: lsm2, SPCC1620.01c
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Probable U6 snRNA-associated Sm-like protein LSm3
    Species: Schizosaccharomyces pombe (strain 972 / ATCC 24843) [TaxId:284812]
    Gene: lsm3, SPBC9B6.05c
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Probable U6 snRNA-associated Sm-like protein LSm4
    Species: Schizosaccharomyces pombe (strain 972 / ATCC 24843) [TaxId:284812]
    Gene: lsm4, SPBC30D10.06
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: U6 snRNA-associated Sm-like protein LSm5
    Species: Schizosaccharomyces pombe (strain 972 / ATCC 24843) [TaxId:284812]
    Gene: lsm5, SPBC20F10.09
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: U6 snRNA-associated Sm-like protein LSm6
    Species: Schizosaccharomyces pombe (strain 972 / ATCC 24843) [TaxId:284812]
    Gene: lsm6, SPAC2F3.17c
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: U6 snRNA-associated Sm-like protein LSm7
    Species: Schizosaccharomyces pombe (strain 972 / ATCC 24843) [TaxId:284812]
    Gene: lsm7, SPCC285.12
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: RNA (5'-r(*ap*up*up*up*up*g)-3')
    Species: synthetic construct, synthetic [TaxId:32630]
  • Heterogens: HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6ppvA (A:)
gsmnqatqiipfttsgslvdyvdrkvivvlrdgkkligilrsfdqfanlmlqytieriyv
ddmygdidrgvyivrgenvvllgeld

    Sequence, based on observed residues (ATOM records):
    >6ppvA (A:)
slvdyvdrkvivvlrdgkkligilrsfdqfanlmlqytieriyvddmygdidrgvyivrg
envvllgel

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6ppvB (B:)
mlfysffktlidtevtvelkndmsirgilksvdqflnvklenisvvdaskyphmaavkdl
firgsvvryvhmssayvdtilladacrrdlannkrq

    Sequence, based on observed residues (ATOM records):
    >6ppvB (B:)
mlfysffktlidtevtvelkndmsirgilksvdqflnvklenisvvdaskyphmaavkdl
firgsvvryvhmssayvdtilladacrrdlann

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6ppvC (C:)
gsmesaqavaepldlvrlsldeivyvklrgdrelngrlhaydehlnmvlgdaeeivtifd
deetdkdkalktirkhyemlfvrgdsviliapprn

    Sequence, based on observed residues (ATOM records):
    >6ppvC (C:)
aepldlvrlsldeivyvklrgdrelngrlhaydehlnmvlgdaeeivtiflktirkhyem
lfvrgdsviliappr

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6ppvD (D:)
mlpltllnatqgrpilvelkngetfnghlencdnymnltlrevirtmpdgdkffrlpecy
irgnnikylriqdevlsqvakqqaqqrenrgsrfrgrgqrgrgnyghtapnrrgrgrggh
mwshpqfek

    Sequence, based on observed residues (ATOM records):
    >6ppvD (D:)
mlpltllnatqgrpilvelkngetfnghlencdnymnltlrevirtmpdgdkffrlpecy
irgnnikylriqdevlsqvakq

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6ppvE (E:)
msmtilplelidkcigsnlwvimkserefagtlvgfddyvnivlkdvteydtvtgvtekh
semllngngmcmlipggkpe

    Sequence, based on observed residues (ATOM records):
    >6ppvE (E:)
ilplelidkcigsnlwvimkserefagtlvgfddyvnivlkdvteydtvtgvtekhseml
lngngmcmlipggkp

  • Chain 'F':
    Sequence, based on SEQRES records:
    >6ppvF (F:)
gsmdsspneflnkvigkkvlirlssgvdykgilscldgymnlalerteeyvngkktnvyg
dafirgnnvlyvsaldd

    Sequence, based on observed residues (ATOM records):
    >6ppvF (F:)
sspneflnkvigkkvlirlssgvdykgilscldgymnlalerteeyvngkktnvygdafi
rgnnvlyvsal

  • Chain 'G':
    Sequence, based on SEQRES records:
    >6ppvG (G:)
msslqkrpgpgnssqpterprkesildlsryqdqriqatftggrqitgilkgfdqlmnlv
lddveeqlrnpedgkltgairklglvvvrgttlvliapmdgseeipnpfvqae

    Sequence, based on observed residues (ATOM records):
    >6ppvG (G:)
sildlsryqdqriqatftggrqitgilkgfdqlmnlvlddveeqlrnpedgkltgairkl
glvvvrgttlvliapmdgseeipnp

  • Chain 'H':
    No sequence available.