PDB entry 6ppo

View 6ppo on RCSB PDB site
Description: rhinovirus c15 complexed with domain i of receptor cdhr3
Deposited on 2019-07-08, released 2020-03-11
The last revision was dated 2020-04-15, with a file datestamp of 2020-04-10.
Experiment type: EM
Resolution: 3.2 Å
R-factor: N/A
AEROSPACI score: 0.1 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Capsid protein VP1
    Species: Rhinovirus C [TaxId:463676]
    Database cross-references and differences (RAF-indexed):
    • Uniprot E5D8F2 (Start-278)
      • variant (124)
  • Chain 'B':
    Compound: capsid protein vp3
    Species: Rhinovirus C [TaxId:463676]
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: capsid protein VP2
    Species: Rhinovirus C [TaxId:463676]
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: capsid protein VP4
    Species: Rhinovirus C [TaxId:463676]
    Database cross-references and differences (RAF-indexed):
  • Chain 'U':
    Compound: Cadherin-related family member 3
    Species: Homo sapiens [TaxId:9606]
    Gene: CDHR3, CDH28
    Database cross-references and differences (RAF-indexed):
  • Heterogens: CA

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6ppoA (A:)
nnddpvenfvestlkevlvvpdtkpsgpqhttkpsilgameigassnatpestietryvy
ntntnaeadvemflgrsalwgkvtltrqyakweinfqeqahirkkfefftylrfdmevti
vtnnkglmqimfvppgidhpethddrkwdsasnpsvffqpksgfprftipftglasayym
fydgydkpkgsdnneygiaptndmgllcfrtldnsggndvkiyvkpkhitawvprpprat
qythkystnyhykpnssgpdehvlkdrhfiktrplissa

    Sequence, based on observed residues (ATOM records):
    >6ppoA (A:)
vvpdtkpsgpqhttkpsilgameigassnatpestietryvyntntnaeadvemflgrsa
lwgkvtltrqyakweinfqeqahirkkfefftylrfdmevtivtnnkglmqimfvppgid
hpethddrkwdsasnpsvffqpksgfprftipftglasayymfydgydkpkgsdnneygi
aptndmgllcfrtldnsggndvkiyvkpkhitawvprppratqythkystnyhykpnssg
pdehvlkdrhfiktrplissa

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records:
    >6ppoB (B:)
glptrlpsgsqqfmttedeqspnilpgfhpskkihipgmitnvmhmarvdsfipinniqg
evgkvsmyyitvtkktvterilvlplemsntlfattllgevlnyyanwsgsititfmcvc
dafstgkflvaytppggklpedrkqamlgvhiiwdlglqssctivvpwissgfyrrtkad
sfthggyvslwyqtafvppvsggtgsilatcsacpdmsvrmlrdspmmeqknelq

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6ppoC (C:)
spsveacgysdrlkqitignstittqdslhtvlaygewptylsdidatsvdkpthpetsa
drfytldsvewqvgshgwwwklpdalkdmgvfgqnmyyhsmgrsgfiihtqcnatkfhsg
alivavipehqlayvggvkvnvgydhthpgqsghqirgpsqsndrsggkpdedplfncng
tllgnitifphqiinlrtnnsstivvpyincvpmdnmlkhnnlslviiplvplrpgssgi
nsvpitvtiapyksefsgameaqrq

    Sequence, based on observed residues (ATOM records):
    >6ppoC (C:)
lkqitignstittqdslhtvlaygewptylsdidatsvdkpthpetsadrfytldsvewq
vgshgwwwklpdalkdmgvfgqnmyyhsmgrsgfiihtqcnatkfhsgalivavipehql
ayvggvkvnvgydhthpgqsghqirgpsqsndrsggkpdedplfncngtllgnitifphq
iinlrtnnsstivvpyincvpmdnmlkhnnlslviiplvplrpgssginsvpitvtiapy
ksefsgameaqrq

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6ppoD (D:)
gaqvsrqnngthengvtasngsvikyfninyykdsassglsrqdfsqdpskftqplvdtl
tnpalm

    Sequence, based on observed residues (ATOM records):
    >6ppoD (D:)
ninyykdsassglsrdpskftqplv

  • Chain 'U':
    Sequence, based on SEQRES records:
    >6ppoU (U:)
masdykddddklhlillpatgnvaensppgtsvhkfsvklsaslspvipgfpqivnsnpl
teafrvnwlsgtyfevvttgmeqldfetgpnifdlqiyvkdevgvtdlqvltvqvtdvne
ppggtkhhhhhh

    Sequence, based on observed residues (ATOM records):
    >6ppoU (U:)
lhlillpatgnvaensppgtsvhkfsvklsaslspvipgfpqivnsnplteafrvnwlsg
tyfevvttgmeqldfetgpnifdlqiyvkdevgvtdlqvltvqvtdvn