PDB entry 6ppk

View 6ppk on RCSB PDB site
Description: rbga+45srbga complex
Deposited on 2019-07-07, released 2019-09-18
The last revision was dated 2021-02-03, with a file datestamp of 2021-01-29.
Experiment type: EM
Resolution: 4.4 Å
R-factor: N/A
AEROSPACI score: 0.04 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: 23s rRNA
    Species: Bacillus subtilis [TaxId:1423]
  • Chain 'B':
    Compound: 5s rRNA
    Species: Bacillus subtilis [TaxId:1423]
  • Chain 'C':
    Compound: 50S ribosomal protein L2
    Species: Bacillus subtilis [TaxId:1423]
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: 50S ribosomal protein L3
    Species: Bacillus subtilis [TaxId:1423]
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: 50S ribosomal protein L4
    Species: Bacillus subtilis [TaxId:1423]
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: 50S ribosomal protein L5
    Species: Bacillus subtilis [TaxId:1423]
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: 50S ribosomal protein L6
    Species: Bacillus subtilis [TaxId:1423]
    Database cross-references and differences (RAF-indexed):
  • Chain 'J':
    Compound: 50S ribosomal protein L13
    Species: Bacillus subtilis [TaxId:1423]
    Database cross-references and differences (RAF-indexed):
  • Chain 'K':
    Compound: 50S ribosomal protein L14
    Species: Bacillus subtilis [TaxId:1423]
    Database cross-references and differences (RAF-indexed):
  • Chain 'L':
    Compound: 50S ribosomal protein L15
    Species: Bacillus subtilis [TaxId:1423]
    Database cross-references and differences (RAF-indexed):
  • Chain 'N':
    Compound: 50S ribosomal protein L17
    Species: Bacillus subtilis [TaxId:1423]
    Database cross-references and differences (RAF-indexed):
  • Chain 'O':
    Compound: 50S ribosomal protein L18
    Species: Bacillus subtilis [TaxId:1423]
    Database cross-references and differences (RAF-indexed):
  • Chain 'P':
    Compound: 50S ribosomal protein L19
    Species: Bacillus subtilis [TaxId:1423]
    Database cross-references and differences (RAF-indexed):
  • Chain 'Q':
    Compound: 50S ribosomal protein L20
    Species: Bacillus subtilis [TaxId:1423]
    Database cross-references and differences (RAF-indexed):
  • Chain 'R':
    Compound: 50S ribosomal protein L21
    Species: Bacillus subtilis [TaxId:1423]
    Database cross-references and differences (RAF-indexed):
  • Chain 'S':
    Compound: 50S ribosomal protein L22
    Species: Bacillus subtilis [TaxId:1423]
    Database cross-references and differences (RAF-indexed):
  • Chain 'T':
    Compound: 50S ribosomal protein L23
    Species: Bacillus subtilis [TaxId:1423]
    Database cross-references and differences (RAF-indexed):
  • Chain 'U':
    Compound: 50S ribosomal protein L24
    Species: Bacillus subtilis [TaxId:1423]
    Database cross-references and differences (RAF-indexed):
  • Chain 'V':
    Compound: 50S ribosomal protein L27
    Species: Bacillus subtilis [TaxId:1423]
    Database cross-references and differences (RAF-indexed):
  • Chain 'W':
    Compound: Ribosome biogenesis GTPase A
    Species: Bacillus subtilis [TaxId:1423]
    Gene: B4417_3550
    Database cross-references and differences (RAF-indexed):
  • Chain 'Y':
    Compound: 50S ribosomal protein L29
    Species: Bacillus subtilis [TaxId:1423]
    Database cross-references and differences (RAF-indexed):
  • Chain 'Z':
    Compound: 50S ribosomal protein L30
    Species: Bacillus subtilis [TaxId:1423]
    Database cross-references and differences (RAF-indexed):
  • Chain 'b':
    Compound: 50S ribosomal protein L32
    Species: Bacillus subtilis [TaxId:1423]
    Database cross-references and differences (RAF-indexed):
  • Chain 'd':
    Compound: 50S ribosomal protein L34
    Species: Bacillus subtilis [TaxId:1423]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: GNP

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    No sequence available.

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6ppkC (C:)
maikkykptsngrrgmttsdfaeittdkpeksllaplhkkggrnnqgkltvrhqggghkr
qyrvidfkrdkdgipgrvatveydpnrsanialinyadgekryilapkgiqvgteimsgp
eadikvgnalplinipvgtvvhnielkpgkggqlvrsagtsaqvlgkegkyvlvrlnsge
vrmilsacrasigqvgneqhelinigkagrsrwkgirptvrgsvmnpndhphgggegrap
igrkspmspwgkptlgfktrkkknksdkfivrrrknk

    Sequence, based on observed residues (ATOM records):
    >6ppkC (C:)
ikkykptsngrrgmttsdfaeittdkpeksllaplhkkggrnnqgkltvrhqggghkrqy
rvidfkrdkdgipgrvatveydpnrsanialinyadgekryilapkgiqvgteimsgpea
dikvgnalplinipvgtvvhnielkpgkggqlvrsagtsaqvlgkegkyvlvrlnsgevr
milsacrasigqvgneqhelinigkagrsrwkgirptvrgsvmnpndhppmspwgkptlg
fktrkkknksdkfivrrrkn

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6ppkD (D:)
mtkgilgrkigmtqvfaengdlipvtvieaapnvvlqkktaendgyeaiqlgfddkrekl
snkpekghvakaetapkrfvkelrgvemdayevgqevkveifsageivdvtgvskgkgfq
gaikrhgqsrgpmshgsryhrrpgsmgpvdpnrvfkgkllpgrmggeqitvqnleivkvd
aernlllikgnvpgakkslitvksavksk

    Sequence, based on observed residues (ATOM records):
    >6ppkD (D:)
tkgilgrkigmtqvfaengdlipvtvieaapnvvlqkktaendgyeaiqlgfddkrekls
nkpekghvakaetapkrfvkelrgvemdayevgqevkveifsageivdvtgvskgkgfqg
aikrhgqsrgpmshgsryhrrpgsmgpvdpnrvfkgkllpgrmggeqitvqnleivkvda
ernlllikgnvpgakkslitvksavk

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6ppkE (E:)
mpkvalynqngstagdielnasvfgiepnesvvfdailmqraslrqgthkvknrsevrgg
grkpwrqkgtgrarqgsirspqwrgggvvfgptprsysyklpkkvrrlaiksvlsskvid
nniivledltldtaktkemaailkglsvekkalivtadaneavalsarnipgvtvveang
invldvvnhekllitkaavekveevla

    Sequence, based on observed residues (ATOM records):
    >6ppkE (E:)
valynqnielnasvfgiepnesvvfdailmqraslrqgthkvknrsevrgggrkpwrqkg
tgrarqgsirspqwrgggvvfgptprsysyklpkkvrrlaiksvlsskvidnniivledl
tldtaktkemaailkglsvekkalivtadaneavalsarnipgvtvveanginvldvvnh
ekllitkaavekveevl

  • Chain 'F':
    Sequence, based on SEQRES records:
    >6ppkF (F:)
mnrlkekynkeiapalmtkfnydsvmqvpkiekivinmgvgdavqnakaidsaveeltfi
agqkpvvtrakksiagfrlregmpigakvtlrgermydfldklisvslprvrdfrgvskk
sfdgrgnytlgikeqlifpeidydkvtkvrgmdivivttantdeearelltqvgmpfqk

    Sequence, based on observed residues (ATOM records):
    >6ppkF (F:)
nrlkekynkeiapalmtkfnydsvmqvpkiekivinmgvsaveeltfiagqkpvvtrakg
mpigakvtlrgermydfldklisvslprvrdfrgvskksfdgrgnytlgivrgmdivivt
tantdeearelltqvgmpf

  • Chain 'G':
    Sequence, based on SEQRES records:
    >6ppkG (G:)
msrvgkklleipsdvtvtlndnntvavkgpkgeltrtfhpdmeikvednvltvarpsdqk
ehralhgttrsllgnmvegvskgferglelvgvgyrasksgnklvlnvgyshpveivpee
gieievpsqtkvvvkgtdkervgaiaaniravrspepykgkgiryegevvrrkegksak

    Sequence, based on observed residues (ATOM records):
    >6ppkG (G:)
kehralhgttrsllgnmvegvskgferglelvgvgyrasksgnklvlnvgyshpveivpe
egieievpsqtkvvvkgtdkervgaiaaniravrspepykgkgiryege

  • Chain 'J':
    Sequence, based on SEQRES records:
    >6ppkJ (J:)
mrttpmanastierkwlvvdaagktlgrlssevaailrgkhkptytphvdtgdhviiina
ekieltgkkltdkiyyrhtqhpgglksrtalemrtnypekmlelaikgmlpkgslgrqmf
kklnvyrgsehpheaqkpevyelrg

    Sequence, based on observed residues (ATOM records):
    >6ppkJ (J:)
tpmanastierkwlvvdaagktlgrlssevaailrgkhkptytphvdtgdhviiinaeki
eltgkkltdkiyyrhtqhpgglksrtalemrtnypekmlelaikgmlpkgslgrqmfkkl
nvyrgsehpheaqkpevyelr

  • Chain 'K':
    Sequence; same for both SEQRES and ATOM records:
    >6ppkK (K:)
miqqetrlkvadnsgarevltikvlggsgrktanigdvivctvkqatpggvvkkgevvka
vivrtksgarrsdgsyisfdenacviirddksprgtrifgpvarelrennfmkivslape
vi

  • Chain 'L':
    Sequence, based on SEQRES records:
    >6ppkL (L:)
mklhelkpsegsrktrnrvgrgigsgngktagkghkgqnarsgggvrpgfeggqmplfqr
lpkrgftninrkeyavvnldklngfaegtevtpellletgvisklnagvkilgngklekk
ltvkankfsasakeaveaaggtaevi

    Sequence, based on observed residues (ATOM records):
    >6ppkL (L:)
mklhelkpsegsrktrnrvgrgigsgngktagkghkgqkrgftninrkeyavvnldklng
faegtevtpellletgvisklnagvkilgngklekkltvkankfsasakeaveaaggtae
vi

  • Chain 'N':
    Sequence, based on SEQRES records:
    >6ppkN (N:)
msyrklgrtsaqrkamlrdlttdliineriettetrakelrsvvekmitlgkrgdlharr
qaaayirnevaneennqdalqklfsdiatryeerqggytrimklgprrgdgapmaiielv

    Sequence, based on observed residues (ATOM records):
    >6ppkN (N:)
yrklgrtsaqrkamlrdlttdliineriettetrakelrsvvekmitlgkrgdlharrqa
aayirnevaneennqdalqklfsdiatryeerqggytrimklgprrgdgapmaiielv

  • Chain 'O':
    Sequence, based on SEQRES records:
    >6ppkO (O:)
mitktsknaarlkrharvraklsgtaerprlnvfrsnkhiyaqiiddvngvtlasastld
kdlnvestgdtsaatkvgelvakraaekgisdvvfdrggylyhgrvkaladaareaglkf

    Sequence, based on observed residues (ATOM records):
    >6ppkO (O:)
knaarlkrharvrakrprlnvfrsnkhiyaqiivtlasastldkdlnvestgdtsaatkv
gelvakraaekdvvfdrggylyhgrvkaladaareaglkf

  • Chain 'P':
    Sequence, based on SEQRES records:
    >6ppkP (P:)
mqklieditkeqlrtdlpafrpgdtlrvhvkvvegnreriqifegvvikrrgggisetft
vrkisygvgvertfpvhtpkiakievvrygkvrraklyylrelrgkaarikeirr

    Sequence, based on observed residues (ATOM records):
    >6ppkP (P:)
qklieditkeqlrtdlpafrpgdtlrvhvkvvegnreriqifegvvikrrgggisetftv
rkisygvgvertfpvhtpkiakievvrygkvrraklyylrelrgkaarikeirr

  • Chain 'Q':
    Sequence, based on SEQRES records:
    >6ppkQ (Q:)
prvkggtvtrkrrkkvlklakgyfgskhtlykvanqqvmksgnyafrdrrqkkrdfrklw
itrinaaarmnglsysrlmhglklsgievnrkmladlavndltafnqladaakaqlnk

    Sequence, based on observed residues (ATOM records):
    >6ppkQ (Q:)
prvkggtvtrkrrkkvlklakgyfgskhtlykvanqqvmksgnyafrdrrqkkrdfrklw
itrinaaarmnglsysrlmhglklsgievnrkmladlavndltafnqladaakaqln

  • Chain 'R':
    Sequence, based on SEQRES records:
    >6ppkR (R:)
myaiiktggkqikveegqtvyieklaaeagetvtfedvlfvggdnvkvgnptvegatvta
kvekqgrakkitvfrykpkknvhkkqghrqpytkvtiekina

    Sequence, based on observed residues (ATOM records):
    >6ppkR (R:)
yaiiktggkqikveegqtvyieklaaeagetvtfedvlfvggdnvkvgnptvegatvtak
vekqgrakkitvfrykpkknvhkkqghrqpytkvtiekin

  • Chain 'S':
    Sequence, based on SEQRES records:
    >6ppkS (S:)
mqakavartvriaprkarlvmdlirgkqvgeavsilnltpraaspiiekvlksaianaeh
nyemdannlvisqafvdegptlkrfrpramgrasqinkrtshitivvsekkeg

    Sequence, based on observed residues (ATOM records):
    >6ppkS (S:)
qakavartvriaprkarlvmdlirgkqvgeavsilnltpraaspiiekvlksaianaehn
yemdannlvisqafvdegptlkrfrpramgrasqinkrtshitivvsek

  • Chain 'T':
    Sequence, based on SEQRES records:
    >6ppkT (T:)
mkdprdvlkrpvitersadlmtekkytfevdvranktevkdavesifgvkvdkvnimnyk
gkskrvgrytgmtsrrrkaivkltadskeieifea

    Sequence, based on observed residues (ATOM records):
    >6ppkT (T:)
dprdvlkrpvitersadlmtekkytfevdvranktevkdavesifgvkvdkvnimnykgk
skrvgrytgmtsrrrkaivkltadskeiei

  • Chain 'U':
    Sequence, based on SEQRES records:
    >6ppkU (U:)
mhvkkgdkvmvisgkdkgkqgtilaafpkkdrvlvegvnmvkkhskptqanpqggisnqe
apihvsnvmpldpktgevtrvgykvedgkkvrvakksgqvldk

    Sequence, based on observed residues (ATOM records):
    >6ppkU (U:)
hvkkgdkvmvisgkdkgkqgtilaafpkkdrvlvegvnmvkkhskptgisnqeapihvsn
vmpldpktgevtrvgykvkkvrvakksgqvl

  • Chain 'V':
    Sequence, based on SEQRES records:
    >6ppkV (V:)
mlrldlqffaskkgvgstkngrdseakrlgakradgqfvtggsilyrqrgtkiypgenvg
rggddtlfakidgtvkferfgrdrkkvsvypvaq

    Sequence, based on observed residues (ATOM records):
    >6ppkV (V:)
skkgvngrdseakrlgakradgqfvtggsilyrqrgtkiypgenvgrggddtlfakidgt
vkferfgrdrkkvsvypv

  • Chain 'W':
    Sequence, based on SEQRES records:
    >6ppkW (W:)
mtiqwfpghmakarrevteklklidivyelvdaripmssrnpmiedilknkprimllnka
dkadaavtqqwkehfenqgirslsinsvngqglnqivpaskeilqekfdrmrakgvkpra
iraliigipnvgkstlinrlakkniaktgdrpgittsqqwvkvgkelelldtpgilwpkf
edelvglrlavtgaikdsiinlqdvavfglrfleehyperlkerygldeipediaelfda
igekrgclmsgglinydktteviirdirtekfgrlsfeqptm

    Sequence, based on observed residues (ATOM records):
    >6ppkW (W:)
wfpghmakarrevteklklidivyelvdaripmssrnpmiedilknkprimllnkadaav
tqqwkehfenqgirslsinsvngqglnqivpaskeilqekfdrmprairaliigipnvgk
stlinrlakkniaktgdrpgittlelldtpgilwpkfvglrlavtgaikdsiinlqdvav
fglrfleehyperlkerygldeipediaelfdaigekrgclmsgglinydktteviirdi
rtekfgrlsfeq

  • Chain 'Y':
    Sequence, based on SEQRES records:
    >6ppkY (Y:)
mkaneirdlttaeieqkvkslkeelfnlrfqlatgqlentarirevrkaiarmktvirer
eiaank

    Sequence, based on observed residues (ATOM records):
    >6ppkY (Y:)
mkaneirdlttaeieqkvkslkeelfnlrfqlatgqlentarirevrkaiarmktvirer
eiaan

  • Chain 'Z':
    Sequence, based on SEQRES records:
    >6ppkZ (Z:)
makleitlkrsvigrpedqrvtvrtlglkktnqtvvhednaairgminkvshlvsvkeq

    Sequence, based on observed residues (ATOM records):
    >6ppkZ (Z:)
akleitlkrsvigrpedqrvtvrtlglkktnqtvvhednaairgminkvshlvsvkeq

  • Chain 'b':
    Sequence, based on SEQRES records:
    >6ppkb (b:)
mavpfrrtskmkkrlrrthfklnvpgmtecpscgemklshrvckacgsyngkdinvksn

    Sequence, based on observed residues (ATOM records):
    >6ppkb (b:)
avpfrrtskmkkrlrrthfklnvpgmtecpscgemklshrvckacgsyngkdi

  • Chain 'd':
    Sequence, based on SEQRES records:
    >6ppkd (d:)
mkrtfqpnnrkrskvhgfrsrmsskngrlvlarrrrkgrkvlsa

    Sequence, based on observed residues (ATOM records):
    >6ppkd (d:)
krtfqpnnrkrskvhgfrsrmsskngrlvlarrrrkgrkvlsa