PDB entry 6pp8

View 6pp8 on RCSB PDB site
Description: clpx in clpx-clpp complex bound to substrate and atp-gamma-s, class 1
Deposited on 2019-07-05, released 2020-03-11
The last revision was dated 2020-03-11, with a file datestamp of 2020-03-06.
Experiment type: EM
Resolution: 4.12 Å
R-factor: N/A
AEROSPACI score: 0.04 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: ATP-dependent Clp protease ATP-binding subunit clpX
    Species: Escherichia coli [TaxId:562]
    Gene: clpX, BUE81_06555
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0A1Q9L861
      • conflict (107)
      • engineered mutation (123)
      • conflict (346)
  • Chain 'B':
    Compound: ATP-dependent Clp protease ATP-binding subunit clpX
    Species: Escherichia coli [TaxId:562]
    Gene: clpX, BUE81_06555
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0A1Q9L861 (0-End)
      • conflict (107)
      • engineered mutation (123)
      • conflict (346)
  • Chain 'C':
    Compound: ATP-dependent Clp protease ATP-binding subunit clpX
    Species: Escherichia coli [TaxId:562]
    Gene: clpX, BUE81_06555
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0A1Q9L861
      • conflict (107)
      • engineered mutation (123)
      • conflict (346)
  • Chain 'D':
    Compound: ATP-dependent Clp protease ATP-binding subunit clpX
    Species: Escherichia coli [TaxId:562]
    Gene: clpX, BUE81_06555
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0A1Q9L861 (0-End)
      • conflict (107)
      • engineered mutation (123)
      • conflict (346)
  • Chain 'E':
    Compound: ATP-dependent Clp protease ATP-binding subunit clpX
    Species: Escherichia coli [TaxId:562]
    Gene: clpX, BUE81_06555
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0A1Q9L861
      • conflict (107)
      • engineered mutation (123)
      • conflict (346)
  • Chain 'F':
    Compound: ATP-dependent Clp protease ATP-binding subunit clpX
    Species: Escherichia coli [TaxId:562]
    Gene: clpX, BUE81_06555
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0A1Q9L861
      • conflict (107)
      • engineered mutation (123)
      • conflict (346)
  • Chain 'S':
    Compound: substrate peptide
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
    • PDB 6PP8 (0-7)
  • Heterogens: AGS, ADP

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6pp8A (A:)
salptpheirnhlddyvigqeqakkvlavavynhykrlrngdtsngvelgksnilligpt
gsgktllaetlarlldvpftmadattlteagyvgedveniiqkllqksdydvqkaqrgiv
yidqidkisrksdnpsitrdvsgegvqqallkliegtvaavppqggrkhpqqeflqvdts
kilficggafagldkvishrvetgsgigfgatvkaksdkasegellaqvepedlikfgli
pefigrlpvvatlnelseealiqilkepknaltkqyqalfnlegvdlefrdealdaiakk
amarktgarglrsiveaalldtmydlpsmedvekvvidesvidgqseplliygkpeaqqa
sgegggtsg

    Sequence, based on observed residues (ATOM records):
    >6pp8A (A:)
ptpheirnhlddyvigqeqakkvlavavynhykrlrngdtsngvelgksnilligptgsg
ktllaetlarlldvpftmadattlteagyvgedveniiqkllqksdydvqkaqrgivyid
qidkisrktrdvsgegvqqallkliegtvaavppqggrqqeflqvdtskilficggafag
ldkvishrvetgsgigfgatvkaksdkasegellaqvepedlikfglipefigrlpvvat
lnelseealiqilkepknaltkqyqalfnlegvdlefrdealdaiakkamarktgarglr
siveaalldtmydlpsmedvekvvidesvidgqseplliy

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6pp8B (B:)
salptpheirnhlddyvigqeqakkvlavavynhykrlrngdtsngvelgksnilligpt
gsgktllaetlarlldvpftmadattlteagyvgedveniiqkllqksdydvqkaqrgiv
yidqidkisrksdnpsitrdvsgegvqqallkliegtvaavppqggrkhpqqeflqvdts
kilficggafagldkvishrvetgsgigfgatvkaksdkasegellaqvepedlikfgli
pefigrlpvvatlnelseealiqilkepknaltkqyqalfnlegvdlefrdealdaiakk
amarktgarglrsiveaalldtmydlpsmedvekvvidesvidgqseplliygkpeaqqa
sgegggtsg

    Sequence, based on observed residues (ATOM records):
    >6pp8B (B:)
salptpheirnhlddyvigqeqakkvlavavynhykrlrngdtsngvelgksnilligpt
gsgktllaetlarlldvpftmadattlteagyvgedveniiqkllqksdydvqkaqrgiv
yidqidkisrksdnpsitrdvsgegvqqallkliegtvaavppqgghpqqeflqvdtski
lficggafagldkvishrvetgsgigfgatvkaksdkasegellaqvepedlikfglipe
figrlpvvatlnelseealiqilkepknaltkqyqalfnlegvdlefrdealdaiakkam
arktgarglrsiveaalldtmydlpsmedvekvvidesvidgqseplliyg

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6pp8C (C:)
salptpheirnhlddyvigqeqakkvlavavynhykrlrngdtsngvelgksnilligpt
gsgktllaetlarlldvpftmadattlteagyvgedveniiqkllqksdydvqkaqrgiv
yidqidkisrksdnpsitrdvsgegvqqallkliegtvaavppqggrkhpqqeflqvdts
kilficggafagldkvishrvetgsgigfgatvkaksdkasegellaqvepedlikfgli
pefigrlpvvatlnelseealiqilkepknaltkqyqalfnlegvdlefrdealdaiakk
amarktgarglrsiveaalldtmydlpsmedvekvvidesvidgqseplliygkpeaqqa
sgegggtsg

    Sequence, based on observed residues (ATOM records):
    >6pp8C (C:)
alptpheirnhlddyvigqeqakkvlavavynhykrlrngdtsngvelgksnilligptg
sgktllaetlarlldvpftmadattlteagyvgedveniiqkllqksdydvqkaqrgivy
idqidkisrksdnpsitrdvsgegvqqallkliegtvaavppqggrkqeflqvdtskilf
icggafagldkvishrvetgsgigfgatvkaksdkasegellaqvepedlikfglipefi
grlpvvatlnelseealiqilkepknaltkqyqalfnlegvdlefrdealdaiakkamar
ktgarglrsiveaalldtmydlpsmedvekvvidesvidgqseplliyg

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6pp8D (D:)
salptpheirnhlddyvigqeqakkvlavavynhykrlrngdtsngvelgksnilligpt
gsgktllaetlarlldvpftmadattlteagyvgedveniiqkllqksdydvqkaqrgiv
yidqidkisrksdnpsitrdvsgegvqqallkliegtvaavppqggrkhpqqeflqvdts
kilficggafagldkvishrvetgsgigfgatvkaksdkasegellaqvepedlikfgli
pefigrlpvvatlnelseealiqilkepknaltkqyqalfnlegvdlefrdealdaiakk
amarktgarglrsiveaalldtmydlpsmedvekvvidesvidgqseplliygkpeaqqa
sgegggtsg

    Sequence, based on observed residues (ATOM records):
    >6pp8D (D:)
salptpheirnhlddyvigqeqakkvlavavynhykrlrngdtsngvelgksnilligpt
gsgktllaetlarlldvpftmadattlteagyvgedveniiqkllqksdydvqkaqrgiv
yidqidkisrksdnpsitrdvsgegvqqallkliegtvaavppqggqqeflqvdtskilf
icggafagldkvishrvetgsgigfgatvkaksdkasegellaqvepedlikfglipefi
grlpvvatlnelseealiqilkepknaltkqyqalfnlegvdlefrdealdaiakkamar
ktgarglrsiveaalldtmydlpsmedvekvvidesvidgqseplliyg

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6pp8E (E:)
salptpheirnhlddyvigqeqakkvlavavynhykrlrngdtsngvelgksnilligpt
gsgktllaetlarlldvpftmadattlteagyvgedveniiqkllqksdydvqkaqrgiv
yidqidkisrksdnpsitrdvsgegvqqallkliegtvaavppqggrkhpqqeflqvdts
kilficggafagldkvishrvetgsgigfgatvkaksdkasegellaqvepedlikfgli
pefigrlpvvatlnelseealiqilkepknaltkqyqalfnlegvdlefrdealdaiakk
amarktgarglrsiveaalldtmydlpsmedvekvvidesvidgqseplliygkpeaqqa
sgegggtsg

    Sequence, based on observed residues (ATOM records):
    >6pp8E (E:)
alptpheirnhlddyvigqeqakkvlavavynhykrlrngdtsngvelgksnilligptg
sgktllaetlarlldvpftmadattlteagyvgedveniiqkllqksdydvqkaqrgivy
idqidkisrksdsitrdvsgegvqqallkliegtvaavppqggrkhqqeflqvdtskilf
icggafagldkvishrvetgsgigfgatvkaksdkasegellaqvepedlikfglipefi
grlpvvatlnelseealiqilkepknaltkqyqalfnlegvdlefrdealdaiakkamar
ktgarglrsiveaalldtmydlpsmedvekvvidesvidgqseplliy

  • Chain 'F':
    Sequence, based on SEQRES records:
    >6pp8F (F:)
salptpheirnhlddyvigqeqakkvlavavynhykrlrngdtsngvelgksnilligpt
gsgktllaetlarlldvpftmadattlteagyvgedveniiqkllqksdydvqkaqrgiv
yidqidkisrksdnpsitrdvsgegvqqallkliegtvaavppqggrkhpqqeflqvdts
kilficggafagldkvishrvetgsgigfgatvkaksdkasegellaqvepedlikfgli
pefigrlpvvatlnelseealiqilkepknaltkqyqalfnlegvdlefrdealdaiakk
amarktgarglrsiveaalldtmydlpsmedvekvvidesvidgqseplliygkpeaqqa
sgegggtsg

    Sequence, based on observed residues (ATOM records):
    >6pp8F (F:)
lptpheirnhlddyvigqeqakkvlavavynhykrlrngdtsngvelgksnilligptgs
gktllaetlarlldvpftmadattlteagyvgedveniiqkllqksdydvqkaqrgivyi
dqidkisrksddvsgegvqqallkliegtvaavppqggqqeflqvdtskilficggafag
ldkvishrvetgsgigfgatvkaksdkasegellaqvepedlikfglipefigrlpvvat
lnelseealiqilkepknaltkqyqalfnlegvdlefrdealdaiakkamarktgarglr
siveaalldtmydlpsmedvekvvidesvidgqseplliy

  • Chain 'S':
    Sequence; same for both SEQRES and ATOM records:
    >6pp8S (S:)
xxxxrxxx