PDB entry 6pp6

View 6pp6 on RCSB PDB site
Description: clpx in clpx-clpp complex bound to substrate and atp-gamma-s, class 3
Deposited on 2019-07-05, released 2020-03-11
The last revision was dated 2020-03-11, with a file datestamp of 2020-03-06.
Experiment type: EM
Resolution: 4.28 Å
R-factor: N/A
AEROSPACI score: 0.04 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: ATP-dependent Clp protease ATP-binding subunit clpX
    Species: Escherichia coli [TaxId:562]
    Gene: clpX, BUE81_06555
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0A1Q9L861
      • conflict (107)
      • engineered mutation (123)
      • conflict (346)
  • Chain 'B':
    Compound: ATP-dependent Clp protease ATP-binding subunit clpX
    Species: Escherichia coli [TaxId:562]
    Gene: clpX, BUE81_06555
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0A1Q9L861
      • conflict (107)
      • engineered mutation (123)
      • conflict (346)
  • Chain 'C':
    Compound: ATP-dependent Clp protease ATP-binding subunit clpX
    Species: Escherichia coli [TaxId:562]
    Gene: clpX, BUE81_06555
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0A1Q9L861
      • conflict (107)
      • engineered mutation (123)
      • conflict (346)
  • Chain 'D':
    Compound: ATP-dependent Clp protease ATP-binding subunit clpX
    Species: Escherichia coli [TaxId:562]
    Gene: clpX, BUE81_06555
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0A1Q9L861 (0-End)
      • conflict (107)
      • engineered mutation (123)
      • conflict (346)
  • Chain 'E':
    Compound: ATP-dependent Clp protease ATP-binding subunit clpX
    Species: Escherichia coli [TaxId:562]
    Gene: clpX, BUE81_06555
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0A1Q9L861
      • conflict (107)
      • engineered mutation (123)
      • conflict (346)
  • Chain 'F':
    Compound: ATP-dependent Clp protease ATP-binding subunit clpX
    Species: Escherichia coli [TaxId:562]
    Gene: clpX, BUE81_06555
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0A1Q9L861
      • conflict (107)
      • engineered mutation (123)
      • conflict (346)
  • Chain 'S':
    Compound: substrate peptide
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
    • PDB 6PP6 (0-6)
  • Heterogens: AGS, ADP

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6pp6A (A:)
salptpheirnhlddyvigqeqakkvlavavynhykrlrngdtsngvelgksnilligpt
gsgktllaetlarlldvpftmadattlteagyvgedveniiqkllqksdydvqkaqrgiv
yidqidkisrksdnpsitrdvsgegvqqallkliegtvaavppqggrkhpqqeflqvdts
kilficggafagldkvishrvetgsgigfgatvkaksdkasegellaqvepedlikfgli
pefigrlpvvatlnelseealiqilkepknaltkqyqalfnlegvdlefrdealdaiakk
amarktgarglrsiveaalldtmydlpsmedvekvvidesvidgqseplliygkpeaqqa
sgegggtsg

    Sequence, based on observed residues (ATOM records):
    >6pp6A (A:)
lptpheirnhlddyvigqeqakkvlavavynhykrlrngdtsngvelgksnilligptgs
gktllaetlarlldvpftmadattlteagyvgedveniiqkllqksdydvqkaqrgivyi
dqidkisrksdnprdvsgegvqqallkliegtvaavppqggrqqeflqvdtskilficgg
afagldkvishrvetgsgigfgatvkaksdkasegellaqvepedlikfglipefigrlp
vvatlnelseealiqilkepknaltkqyqalfnlegvdlefrdealdaiakkamarktga
rglrsiveaalldtmydlpsmedvekvvidesvidgqseplliy

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6pp6B (B:)
salptpheirnhlddyvigqeqakkvlavavynhykrlrngdtsngvelgksnilligpt
gsgktllaetlarlldvpftmadattlteagyvgedveniiqkllqksdydvqkaqrgiv
yidqidkisrksdnpsitrdvsgegvqqallkliegtvaavppqggrkhpqqeflqvdts
kilficggafagldkvishrvetgsgigfgatvkaksdkasegellaqvepedlikfgli
pefigrlpvvatlnelseealiqilkepknaltkqyqalfnlegvdlefrdealdaiakk
amarktgarglrsiveaalldtmydlpsmedvekvvidesvidgqseplliygkpeaqqa
sgegggtsg

    Sequence, based on observed residues (ATOM records):
    >6pp6B (B:)
alptpheirnhlddyvigqeqakkvlavavynhykrlrngdtsngvelgksnilligptg
sgktllaetlarlldvpftmadattlteagyvgedveniiqkllqksdydvqkaqrgivy
idqidkisrksdnpsitrdvsgegvqqallkliegtvaavppqgqqeflqvdtskilfic
ggafagldkvishrvetgsgigfgatvkaksdkasegellaqvepedlikfglipefigr
lpvvatlnelseealiqilkepknaltkqyqalfnlegvdlefrdealdaiakkamarkt
garglrsiveaalldtmydlpsmedvekvvidesvidgqseplliy

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6pp6C (C:)
salptpheirnhlddyvigqeqakkvlavavynhykrlrngdtsngvelgksnilligpt
gsgktllaetlarlldvpftmadattlteagyvgedveniiqkllqksdydvqkaqrgiv
yidqidkisrksdnpsitrdvsgegvqqallkliegtvaavppqggrkhpqqeflqvdts
kilficggafagldkvishrvetgsgigfgatvkaksdkasegellaqvepedlikfgli
pefigrlpvvatlnelseealiqilkepknaltkqyqalfnlegvdlefrdealdaiakk
amarktgarglrsiveaalldtmydlpsmedvekvvidesvidgqseplliygkpeaqqa
sgegggtsg

    Sequence, based on observed residues (ATOM records):
    >6pp6C (C:)
alptpheirnhlddyvigqeqakkvlavavynhykrlrngdtsngvelgksnilligptg
sgktllaetlarlldvpftmadattlteagyvgedveniiqkllqksdydvqkaqrgivy
idqidkisrksdnpsitrdvsgegvqqallkliegtvaavppqqqeflqvdtskilficg
gafagldkvishrvetgsgigfgatvkaksdkasegellaqvepedlikfglipefigrl
pvvatlnelseealiqilkepknaltkqyqalfnlegvdlefrdealdaiakkamarktg
arglrsiveaalldtmydlpsmedvekvvidesvidgqseplliyg

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6pp6D (D:)
salptpheirnhlddyvigqeqakkvlavavynhykrlrngdtsngvelgksnilligpt
gsgktllaetlarlldvpftmadattlteagyvgedveniiqkllqksdydvqkaqrgiv
yidqidkisrksdnpsitrdvsgegvqqallkliegtvaavppqggrkhpqqeflqvdts
kilficggafagldkvishrvetgsgigfgatvkaksdkasegellaqvepedlikfgli
pefigrlpvvatlnelseealiqilkepknaltkqyqalfnlegvdlefrdealdaiakk
amarktgarglrsiveaalldtmydlpsmedvekvvidesvidgqseplliygkpeaqqa
sgegggtsg

    Sequence, based on observed residues (ATOM records):
    >6pp6D (D:)
salptpheirnhlddyvigqeqakkvlavavynhykrlrngdtsngvelgksnilligpt
gsgktllaetlarlldvpftmadattlteagyvgedveniiqkllqksdydvqkaqrgiv
yidqidkisrksdnpsitrdvsgegvqqallkliegtvaavppqggqqeflqvdtskilf
icggafagldkvishrvetgsgigfgatvkaksdkasegellaqvepedlikfglipefi
grlpvvatlnelseealiqilkepknaltkqyqalfnlegvdlefrdealdaiakkamar
ktgarglrsiveaalldtmydlpsmedvekvvidesvidgqseplliyg

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6pp6E (E:)
salptpheirnhlddyvigqeqakkvlavavynhykrlrngdtsngvelgksnilligpt
gsgktllaetlarlldvpftmadattlteagyvgedveniiqkllqksdydvqkaqrgiv
yidqidkisrksdnpsitrdvsgegvqqallkliegtvaavppqggrkhpqqeflqvdts
kilficggafagldkvishrvetgsgigfgatvkaksdkasegellaqvepedlikfgli
pefigrlpvvatlnelseealiqilkepknaltkqyqalfnlegvdlefrdealdaiakk
amarktgarglrsiveaalldtmydlpsmedvekvvidesvidgqseplliygkpeaqqa
sgegggtsg

    Sequence, based on observed residues (ATOM records):
    >6pp6E (E:)
alptpheirnhlddyvigqeqakkvlavavynhykrlrngdtsngvelgksnilligptg
sgktllaetlarlldvpftmadattlteagyvgedveniiqkllqksdydvqkaqrgivy
idqidkisrksdnpsitrdvsgegvqqallkliegtvaavppqgqeflqvdtskilficg
gafagldkvishrvetgsgigfgatvkaksdkasegellaqvepedlikfglipefigrl
pvvatlnelseealiqilkepknaltkqyqalfnlegvdlefrdealdaiakkamarktg
arglrsiveaalldtmydlpsmedvekvvidesvidgqseplliy

  • Chain 'F':
    Sequence, based on SEQRES records:
    >6pp6F (F:)
salptpheirnhlddyvigqeqakkvlavavynhykrlrngdtsngvelgksnilligpt
gsgktllaetlarlldvpftmadattlteagyvgedveniiqkllqksdydvqkaqrgiv
yidqidkisrksdnpsitrdvsgegvqqallkliegtvaavppqggrkhpqqeflqvdts
kilficggafagldkvishrvetgsgigfgatvkaksdkasegellaqvepedlikfgli
pefigrlpvvatlnelseealiqilkepknaltkqyqalfnlegvdlefrdealdaiakk
amarktgarglrsiveaalldtmydlpsmedvekvvidesvidgqseplliygkpeaqqa
sgegggtsg

    Sequence, based on observed residues (ATOM records):
    >6pp6F (F:)
lptpheirnhlddyvigqeqakkvlavavynhykrlrngdtsngvelgksnilligptgs
gktllaetlarlldvpftmadattltdveniiqkllqksdydvqkaqrgivyidqidkis
rksdvsgegvqqallkliegtvaavppqggqeflqvdtskilficggafagldkvishrv
etgsgigfgatvkaksdkasegellaqvepedlikfglipefigrlpvvatlnelseeal
iqilkepknaltkqyqalfnlegvdlefrdealdaiakkamarktgarglrsiveaalld
tmydlpsmedvekvvidesvidgqseplliy

  • Chain 'S':
    Sequence; same for both SEQRES and ATOM records:
    >6pp6S (S:)
xxhxxxx