PDB entry 6pp5

View 6pp5 on RCSB PDB site
Description: clpx in clpx-clpp complex bound to substrate and atp-gamma-s, class 4
Deposited on 2019-07-05, released 2020-03-11
The last revision was dated 2020-03-11, with a file datestamp of 2020-03-06.
Experiment type: EM
Resolution: 3.98 Å
R-factor: N/A
AEROSPACI score: 0.05 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: ATP-dependent Clp protease ATP-binding subunit clpX
    Species: Escherichia coli [TaxId:562]
    Gene: clpX, BUE81_06555
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0A1Q9L861
      • conflict (107)
      • engineered mutation (123)
      • conflict (346)
  • Chain 'B':
    Compound: ATP-dependent Clp protease ATP-binding subunit clpX
    Species: Escherichia coli [TaxId:562]
    Gene: clpX, BUE81_06555
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0A1Q9L861
      • conflict (107)
      • engineered mutation (123)
      • conflict (346)
  • Chain 'C':
    Compound: ATP-dependent Clp protease ATP-binding subunit clpX
    Species: Escherichia coli [TaxId:562]
    Gene: clpX, BUE81_06555
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0A1Q9L861
      • conflict (107)
      • engineered mutation (123)
      • conflict (346)
  • Chain 'D':
    Compound: ATP-dependent Clp protease ATP-binding subunit clpX
    Species: Escherichia coli [TaxId:562]
    Gene: clpX, BUE81_06555
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0A1Q9L861 (0-End)
      • conflict (107)
      • engineered mutation (123)
      • conflict (346)
  • Chain 'E':
    Compound: ATP-dependent Clp protease ATP-binding subunit clpX
    Species: Escherichia coli [TaxId:562]
    Gene: clpX, BUE81_06555
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0A1Q9L861 (0-End)
      • conflict (107)
      • engineered mutation (123)
      • conflict (346)
  • Chain 'F':
    Compound: ATP-dependent Clp protease ATP-binding subunit clpX
    Species: Escherichia coli [TaxId:562]
    Gene: clpX, BUE81_06555
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0A1Q9L861
      • conflict (107)
      • engineered mutation (123)
      • conflict (346)
  • Chain 'S':
    Compound: substrate peptide
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
    • PDB 6PP5 (0-11)
  • Heterogens: AGS, ADP

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6pp5A (A:)
salptpheirnhlddyvigqeqakkvlavavynhykrlrngdtsngvelgksnilligpt
gsgktllaetlarlldvpftmadattlteagyvgedveniiqkllqksdydvqkaqrgiv
yidqidkisrksdnpsitrdvsgegvqqallkliegtvaavppqggrkhpqqeflqvdts
kilficggafagldkvishrvetgsgigfgatvkaksdkasegellaqvepedlikfgli
pefigrlpvvatlnelseealiqilkepknaltkqyqalfnlegvdlefrdealdaiakk
amarktgarglrsiveaalldtmydlpsmedvekvvidesvidgqseplliygkpeaqqa
sgegggtsg

    Sequence, based on observed residues (ATOM records):
    >6pp5A (A:)
alptpheirnhlddyvigqeqakkvlavavynhykrlrngdtsngvelgksnilligptg
sgktllaetlarlldvpftmadattlteagyvgedveniiqkllqksdydvqkaqrgivy
idqidkisrksdnrdvsgegvqqallkliegtvaavppqgeflqvdtskilficggafag
ldkvishrvetgsgigfgatvkaksdkasegellaqvepedlikfglipefigrlpvvat
lnelseealiqilkepknaltkqyqalfnlegvdlefrdealdaiakkamarktgarglr
siveaalldtmydlpsmedvekvvidesvidgqseplliyg

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6pp5B (B:)
salptpheirnhlddyvigqeqakkvlavavynhykrlrngdtsngvelgksnilligpt
gsgktllaetlarlldvpftmadattlteagyvgedveniiqkllqksdydvqkaqrgiv
yidqidkisrksdnpsitrdvsgegvqqallkliegtvaavppqggrkhpqqeflqvdts
kilficggafagldkvishrvetgsgigfgatvkaksdkasegellaqvepedlikfgli
pefigrlpvvatlnelseealiqilkepknaltkqyqalfnlegvdlefrdealdaiakk
amarktgarglrsiveaalldtmydlpsmedvekvvidesvidgqseplliygkpeaqqa
sgegggtsg

    Sequence, based on observed residues (ATOM records):
    >6pp5B (B:)
alptpheirnhlddyvigqeqakkvlavavynhykrlrngdtsngvelgksnilligptg
sgktllaetlarlldvpftmadattlteagyvgedveniiqkllqksdydvqkaqrgivy
idqidkisrksdnpsitrdvsgegvqqallkliegtvaavppqggrkhpqqeflqvdtsk
ilficggafagldkvishrvetgsgigfgatvkaksdkasegellaqvepedlikfglip
efigrlpvvatlnelseealiqilkepknaltkqyqalfnlegvdlefrdealdaiakka
marktgarglrsiveaalldtmydlpsmedvekvvidesvidgqseplliyg

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6pp5C (C:)
salptpheirnhlddyvigqeqakkvlavavynhykrlrngdtsngvelgksnilligpt
gsgktllaetlarlldvpftmadattlteagyvgedveniiqkllqksdydvqkaqrgiv
yidqidkisrksdnpsitrdvsgegvqqallkliegtvaavppqggrkhpqqeflqvdts
kilficggafagldkvishrvetgsgigfgatvkaksdkasegellaqvepedlikfgli
pefigrlpvvatlnelseealiqilkepknaltkqyqalfnlegvdlefrdealdaiakk
amarktgarglrsiveaalldtmydlpsmedvekvvidesvidgqseplliygkpeaqqa
sgegggtsg

    Sequence, based on observed residues (ATOM records):
    >6pp5C (C:)
alptpheirnhlddyvigqeqakkvlavavynhykrlrngdtsngvelgksnilligptg
sgktllaetlarlldvpftmadattlteagyvgedveniiqkllqksdydvqkaqrgivy
idqidkisrksdnpsitrdvsgegvqqallkliegtvaavppqggrkhpqqeflqvdtsk
ilficggafagldkvishrvetgsgigfgatvkaksdkasegellaqvepedlikfglip
efigrlpvvatlnelseealiqilkepknaltkqyqalfnlegvdlefrdealdaiakka
marktgarglrsiveaalldtmydlpsmedvekvvidesvidgqseplliyg

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6pp5D (D:)
salptpheirnhlddyvigqeqakkvlavavynhykrlrngdtsngvelgksnilligpt
gsgktllaetlarlldvpftmadattlteagyvgedveniiqkllqksdydvqkaqrgiv
yidqidkisrksdnpsitrdvsgegvqqallkliegtvaavppqggrkhpqqeflqvdts
kilficggafagldkvishrvetgsgigfgatvkaksdkasegellaqvepedlikfgli
pefigrlpvvatlnelseealiqilkepknaltkqyqalfnlegvdlefrdealdaiakk
amarktgarglrsiveaalldtmydlpsmedvekvvidesvidgqseplliygkpeaqqa
sgegggtsg

    Sequence, based on observed residues (ATOM records):
    >6pp5D (D:)
salptpheirnhlddyvigqeqakkvlavavynhykrlrngdtsngvelgksnilligpt
gsgktllaetlarlldvpftmadattlteagyvgedveniiqkllqksdydvqkaqrgiv
yidqidkisrksdnpsitrdvsgegvqqallkliegtvaavppqgqeflqvdtskilfic
ggafagldkvishrvetgsgigfgatvkaksdkasegellaqvepedlikfglipefigr
lpvvatlnelseealiqilkepknaltkqyqalfnlegvdlefrdealdaiakkamarkt
garglrsiveaalldtmydlpsmedvekvvidesvidgqseplliyg

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6pp5E (E:)
salptpheirnhlddyvigqeqakkvlavavynhykrlrngdtsngvelgksnilligpt
gsgktllaetlarlldvpftmadattlteagyvgedveniiqkllqksdydvqkaqrgiv
yidqidkisrksdnpsitrdvsgegvqqallkliegtvaavppqggrkhpqqeflqvdts
kilficggafagldkvishrvetgsgigfgatvkaksdkasegellaqvepedlikfgli
pefigrlpvvatlnelseealiqilkepknaltkqyqalfnlegvdlefrdealdaiakk
amarktgarglrsiveaalldtmydlpsmedvekvvidesvidgqseplliygkpeaqqa
sgegggtsg

    Sequence, based on observed residues (ATOM records):
    >6pp5E (E:)
salptpheirnhlddyvigqeqakkvlavavynhykrlrngdtsngvelgksnilligpt
gsgktllaetlarlldvpftmadattlteagyvgedveniiqkllqksdydvqkaqrgiv
yidqidkisrksdnpsitrdvsgegvqqallkliegtvaavppqggrqeflqvdtskilf
icggafagldkvishrvetgsgigfgatvkaksdkasegellaqvepedlikfglipefi
grlpvvatlnelseealiqilkepknaltkqyqalfnlegvdlefrdealdaiakkamar
ktgarglrsiveaalldtmydlpsmedvekvvidesvidgqseplliy

  • Chain 'F':
    Sequence, based on SEQRES records:
    >6pp5F (F:)
salptpheirnhlddyvigqeqakkvlavavynhykrlrngdtsngvelgksnilligpt
gsgktllaetlarlldvpftmadattlteagyvgedveniiqkllqksdydvqkaqrgiv
yidqidkisrksdnpsitrdvsgegvqqallkliegtvaavppqggrkhpqqeflqvdts
kilficggafagldkvishrvetgsgigfgatvkaksdkasegellaqvepedlikfgli
pefigrlpvvatlnelseealiqilkepknaltkqyqalfnlegvdlefrdealdaiakk
amarktgarglrsiveaalldtmydlpsmedvekvvidesvidgqseplliygkpeaqqa
sgegggtsg

    Sequence, based on observed residues (ATOM records):
    >6pp5F (F:)
lptpheirnhlddyvigqeqakkvlavavynhykrlrngdtsngvelgksnilligptgs
gktllaetlarlldvpftmadattgedveniiqkllqksdydvqkaqrgivyidqidkis
rdvsgegvqqallkliegtvaavppqggqqeflqvdtskilficggafagldkvishrve
tgsgigfgatvsegellaqvepedlikfglipefigrlpvvatlnelseealiqilkepk
naltkqyqalfnlegvdlefrdealdaiakkamarktgarglrsiveaalldtmydlpsm
edvekvvidesvidgqseplliy

  • Chain 'S':
    Sequence; same for both SEQRES and ATOM records:
    >6pp5S (S:)
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