PDB entry 6pm4

View 6pm4 on RCSB PDB site
Description: cryoem structure of zebra fish alpha-1 glycine receptor bound with glycine in sma, super-open state
Deposited on 2019-07-01, released 2021-02-10
The last revision was dated 2021-08-25, with a file datestamp of 2021-08-20.
Experiment type: EM
Resolution: 4 Å
R-factor: N/A
AEROSPACI score: 0.13 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Glycine receptor subunit alphaZ1
    Species: Danio rerio [TaxId:7955]
    Gene: GLRA1
    Database cross-references and differences (RAF-indexed):
    • Uniprot O93430 (0-443)
      • expression tag (444-457)
  • Chain 'B':
    Compound: Glycine receptor subunit alphaZ1
    Species: Danio rerio [TaxId:7955]
    Gene: GLRA1
    Database cross-references and differences (RAF-indexed):
    • Uniprot O93430 (0-443)
      • expression tag (444-457)
  • Chain 'C':
    Compound: Glycine receptor subunit alphaZ1
    Species: Danio rerio [TaxId:7955]
    Gene: GLRA1
    Database cross-references and differences (RAF-indexed):
    • Uniprot O93430 (0-443)
      • expression tag (444-457)
  • Chain 'D':
    Compound: Glycine receptor subunit alphaZ1
    Species: Danio rerio [TaxId:7955]
    Gene: GLRA1
    Database cross-references and differences (RAF-indexed):
    • Uniprot O93430 (0-443)
      • expression tag (444-457)
  • Chain 'E':
    Compound: Glycine receptor subunit alphaZ1
    Species: Danio rerio [TaxId:7955]
    Gene: GLRA1
    Database cross-references and differences (RAF-indexed):
    • Uniprot O93430 (0-443)
      • expression tag (444-457)
  • Heterogens: GLY

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6pm4A (A:)
mfalgiylwetivffslaasqqaaarkaaspmppsefldklmgkvsgydarirpnfkgpp
vnvtcnifinsfgsiaettmdyrvniflrqqwndprlayseypddsldldpsmldsiwkp
dlffanekganfhevttdnkllriskngnvlysiritlvlacpmdlknfpmdvqtcimql
esfgytmndlifewdekgavqvadgltlpqfilkeekdlryctkhyntgkftciearfhl
erqmgyyliqmyipsllivilswvsfwinmdaaparvglgittvltmttqssgsraslpk
vsyvkaidiwmavcllfvfsalleyaavnfiarqhkellrfqrrrrhlkedeagdgrfsf
aaygmgpaclqakdgmaikgnnnnaptstnppektveemrklfisrakridtvsrvafpl
vflifnifywitykiirsedihkqlvprgshhhhhhhh

    Sequence, based on observed residues (ATOM records):
    >6pm4A (A:)
pmppsefldklmgkvsgydarirpnfkgppvnvtcnifinsfgsiaettmdyrvniflrq
qwndprlayseypddsldldpsmldsiwkpdlffanekganfhevttdnkllriskngnv
lysiritlvlacpmdlknfpmdvqtcimqlesfgytmndlifewdekgavqvadgltlpq
filkeekdlryctkhyntgkftciearfhlerqmgyyliqmyipsllivilswvsfwinm
daaparvglgittvltmttqssgsraslpkvsyvkaidiwmavcllfvfsalleyaavnf
iarqhveemrklfisrakridtvsrvafplvflifnifywitykii

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6pm4B (B:)
mfalgiylwetivffslaasqqaaarkaaspmppsefldklmgkvsgydarirpnfkgpp
vnvtcnifinsfgsiaettmdyrvniflrqqwndprlayseypddsldldpsmldsiwkp
dlffanekganfhevttdnkllriskngnvlysiritlvlacpmdlknfpmdvqtcimql
esfgytmndlifewdekgavqvadgltlpqfilkeekdlryctkhyntgkftciearfhl
erqmgyyliqmyipsllivilswvsfwinmdaaparvglgittvltmttqssgsraslpk
vsyvkaidiwmavcllfvfsalleyaavnfiarqhkellrfqrrrrhlkedeagdgrfsf
aaygmgpaclqakdgmaikgnnnnaptstnppektveemrklfisrakridtvsrvafpl
vflifnifywitykiirsedihkqlvprgshhhhhhhh

    Sequence, based on observed residues (ATOM records):
    >6pm4B (B:)
pmppsefldklmgkvsgydarirpnfkgppvnvtcnifinsfgsiaettmdyrvniflrq
qwndprlayseypddsldldpsmldsiwkpdlffanekganfhevttdnkllriskngnv
lysiritlvlacpmdlknfpmdvqtcimqlesfgytmndlifewdekgavqvadgltlpq
filkeekdlryctkhyntgkftciearfhlerqmgyyliqmyipsllivilswvsfwinm
daaparvglgittvltmttqssgsraslpkvsyvkaidiwmavcllfvfsalleyaavnf
iarqhveemrklfisrakridtvsrvafplvflifnifywitykii

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6pm4C (C:)
mfalgiylwetivffslaasqqaaarkaaspmppsefldklmgkvsgydarirpnfkgpp
vnvtcnifinsfgsiaettmdyrvniflrqqwndprlayseypddsldldpsmldsiwkp
dlffanekganfhevttdnkllriskngnvlysiritlvlacpmdlknfpmdvqtcimql
esfgytmndlifewdekgavqvadgltlpqfilkeekdlryctkhyntgkftciearfhl
erqmgyyliqmyipsllivilswvsfwinmdaaparvglgittvltmttqssgsraslpk
vsyvkaidiwmavcllfvfsalleyaavnfiarqhkellrfqrrrrhlkedeagdgrfsf
aaygmgpaclqakdgmaikgnnnnaptstnppektveemrklfisrakridtvsrvafpl
vflifnifywitykiirsedihkqlvprgshhhhhhhh

    Sequence, based on observed residues (ATOM records):
    >6pm4C (C:)
pmppsefldklmgkvsgydarirpnfkgppvnvtcnifinsfgsiaettmdyrvniflrq
qwndprlayseypddsldldpsmldsiwkpdlffanekganfhevttdnkllriskngnv
lysiritlvlacpmdlknfpmdvqtcimqlesfgytmndlifewdekgavqvadgltlpq
filkeekdlryctkhyntgkftciearfhlerqmgyyliqmyipsllivilswvsfwinm
daaparvglgittvltmttqssgsraslpkvsyvkaidiwmavcllfvfsalleyaavnf
iarqhveemrklfisrakridtvsrvafplvflifnifywitykii

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6pm4D (D:)
mfalgiylwetivffslaasqqaaarkaaspmppsefldklmgkvsgydarirpnfkgpp
vnvtcnifinsfgsiaettmdyrvniflrqqwndprlayseypddsldldpsmldsiwkp
dlffanekganfhevttdnkllriskngnvlysiritlvlacpmdlknfpmdvqtcimql
esfgytmndlifewdekgavqvadgltlpqfilkeekdlryctkhyntgkftciearfhl
erqmgyyliqmyipsllivilswvsfwinmdaaparvglgittvltmttqssgsraslpk
vsyvkaidiwmavcllfvfsalleyaavnfiarqhkellrfqrrrrhlkedeagdgrfsf
aaygmgpaclqakdgmaikgnnnnaptstnppektveemrklfisrakridtvsrvafpl
vflifnifywitykiirsedihkqlvprgshhhhhhhh

    Sequence, based on observed residues (ATOM records):
    >6pm4D (D:)
pmppsefldklmgkvsgydarirpnfkgppvnvtcnifinsfgsiaettmdyrvniflrq
qwndprlayseypddsldldpsmldsiwkpdlffanekganfhevttdnkllriskngnv
lysiritlvlacpmdlknfpmdvqtcimqlesfgytmndlifewdekgavqvadgltlpq
filkeekdlryctkhyntgkftciearfhlerqmgyyliqmyipsllivilswvsfwinm
daaparvglgittvltmttqssgsraslpkvsyvkaidiwmavcllfvfsalleyaavnf
iarqhveemrklfisrakridtvsrvafplvflifnifywitykii

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6pm4E (E:)
mfalgiylwetivffslaasqqaaarkaaspmppsefldklmgkvsgydarirpnfkgpp
vnvtcnifinsfgsiaettmdyrvniflrqqwndprlayseypddsldldpsmldsiwkp
dlffanekganfhevttdnkllriskngnvlysiritlvlacpmdlknfpmdvqtcimql
esfgytmndlifewdekgavqvadgltlpqfilkeekdlryctkhyntgkftciearfhl
erqmgyyliqmyipsllivilswvsfwinmdaaparvglgittvltmttqssgsraslpk
vsyvkaidiwmavcllfvfsalleyaavnfiarqhkellrfqrrrrhlkedeagdgrfsf
aaygmgpaclqakdgmaikgnnnnaptstnppektveemrklfisrakridtvsrvafpl
vflifnifywitykiirsedihkqlvprgshhhhhhhh

    Sequence, based on observed residues (ATOM records):
    >6pm4E (E:)
pmppsefldklmgkvsgydarirpnfkgppvnvtcnifinsfgsiaettmdyrvniflrq
qwndprlayseypddsldldpsmldsiwkpdlffanekganfhevttdnkllriskngnv
lysiritlvlacpmdlknfpmdvqtcimqlesfgytmndlifewdekgavqvadgltlpq
filkeekdlryctkhyntgkftciearfhlerqmgyyliqmyipsllivilswvsfwinm
daaparvglgittvltmttqssgsraslpkvsyvkaidiwmavcllfvfsalleyaavnf
iarqhveemrklfisrakridtvsrvafplvflifnifywitykii