PDB entry 6pi0

View 6pi0 on RCSB PDB site
Description: agad472n-linear blood group b type 2 trisaccharide complex structure
Deposited on 2019-06-25, released 2019-10-02
The last revision was dated 2020-07-29, with a file datestamp of 2020-07-04.
Experiment type: XRAY
Resolution: 2.09 Å
R-factor: N/A
AEROSPACI score: 0.37 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: alpha-galactosidase
    Species: Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4) [TaxId:170187]
    Gene: aga, SP_1898
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0A0H2URQ6 (20-739)
      • expression tag (19)
      • engineered mutation (491)
  • Heterogens: GAL, GLA, TLA, EDO, ACT, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6pi0A (A:)
    mgsshhhhhhssglvprgshmgvriennlfyvesknlsliienrngylllkhlgktikny
    kgsnsvyerdhafsgnptatnrtfsldtqrqifgqhglgdfrkptiqvqhsvtevtdfrf
    veakilkgqngpqglpsphsmddtetlvlmledskaqlsltlyyttfnndatiasyskld
    nnsnqevvihkdfsfmadfpaadyeivtlqgayarektvrrqqveqgifsissnrgasgh
    aqtpalllceqgvtedagnvfaiqlmysgnfeafvqknqlnevrvaiginpenfswklap
    eeyfetpvalvthsdqgltgishesqnfvlkhimlsefskkerpilinnweatyfdfqre
    klleladeakkvgielfvlddgwfgnrfddnralgdwvvneeklggsleslisaihergl
    qfglwlepemisvdsdlyrqhpdwaiqvpgyehtysrnqlvlnlanpqvveylksvldql
    lfyhdidyikwnmnrnitklgngltyletqmqshqymlglyelvsyltekhshilfescs
    ggggrndlgmmryfpqvwasdntdaiarlpiqygssylyptismgahvsavpnhqmgrmt
    pletrglvammgnlgyeldltnlsdeekatianqvnlykelrpvvqlgqqyrlinpdtvs
    neaavqfnygnqtivtyvrvlsvvetmettlklkdldeeglyklqengevysgaelmyag
    ltvilsqgdflsrqyifrkl
    

    Sequence, based on observed residues (ATOM records):
    >6pi0A (A:)
    hmgvriennlfyvesknlsliienrngylllkhlgktiknykgsnsvyerdhafsgnpta
    tnrtfsldtqrqifgqhglgdfrkptiqvqhsvtevtdfrfveakilkgqngpqglpsph
    smddtetlvlmledskaqlsltlyyttfnndatiasyskldnnsnqevvihkdfsfmadf
    paadyeivtlqgayarektvrrqqveqgifsissnrgasghaqtpalllceqgvtedagn
    vfaiqlmysgnfeafvqknqlnevrvaiginpenfswklapeeyfetpvalvthsdqglt
    gishesqnfvlkhimlsefskkerpilinnweatyfdfqreklleladeakkvgielfvl
    ddgwfgnrfddnralgdwvvneeklggsleslisaiherglqfglwlepemisvdsdlyr
    qhpdwaiqvpgyehtysrnqlvlnlanpqvveylksvldqllfyhdidyikwnmnrnitk
    lgngltyletqmqshqymlglyelvsyltekhshilfescsggggrndlgmmryfpqvwa
    sdntdaiarlpiqygssylyptismgahvsavpnhqmgrmtpletrglvammgnlgyeld
    ltnlsdeekatianqvnlykelrpvvqlgqqyrlinpdtvsneaavqfnygnqtivtyvr
    vlsvvetmettlklkdldeeglyklqengevysgaelmyagltvilsqgdflsrqyifrk
    l