PDB entry 6pfv

View 6pfv on RCSB PDB site
Description: structure of s. venezuelae risg-whig-c-di-gmp complex: orthorhombic crystal form
Deposited on 2019-06-22, released 2019-11-13
The last revision was dated 2020-02-19, with a file datestamp of 2020-02-14.
Experiment type: XRAY
Resolution: 3 Å
R-factor: N/A
AEROSPACI score: 0.13 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: RNA polymerase sigma factor
    Species: Streptomyces sp. PanSC19 [TaxId:1520455]
    Gene: EDD98_3685
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0A3N1Q704
      • engineered mutation (37)
      • engineered mutation (96)
      • engineered mutation (143)
      • engineered mutation (149)
      • engineered mutation (158)
      • engineered mutation (161)
  • Chain 'B':
    Compound: AmfC protein
    Species: Streptomyces venezuelae (strain ATCC 10712 / CBS 650.69 / DSM 40230 / JCM 4526 / NBRC 13096 / PD 04745) [TaxId:953739]
    Gene: SVEN_3933
    Database cross-references and differences (RAF-indexed):
    • Uniprot F2RFR7 (Start-175)
      • engineered mutation (67)
  • Chain 'D':
    Compound: RNA polymerase sigma factor
    Species: Streptomyces sp. PanSC19 [TaxId:1520455]
    Gene: EDD98_3685
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0A3N1Q704
      • engineered mutation (37)
      • engineered mutation (96)
      • engineered mutation (143)
      • engineered mutation (149)
      • engineered mutation (158)
      • engineered mutation (161)
  • Chain 'E':
    Compound: AmfC protein
    Species: Streptomyces venezuelae (strain ATCC 10712 / CBS 650.69 / DSM 40230 / JCM 4526 / NBRC 13096 / PD 04745) [TaxId:953739]
    Gene: SVEN_3933
    Database cross-references and differences (RAF-indexed):
    • Uniprot F2RFR7 (Start-175)
      • engineered mutation (67)
  • Chain 'G':
    Compound: RNA polymerase sigma factor
    Species: Streptomyces sp. PanSC19 [TaxId:1520455]
    Gene: EDD98_3685
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0A3N1Q704
      • engineered mutation (37)
      • engineered mutation (96)
      • engineered mutation (143)
      • engineered mutation (149)
      • engineered mutation (158)
      • engineered mutation (161)
  • Chain 'T':
    Compound: AmfC protein
    Species: Streptomyces venezuelae (strain ATCC 10712 / CBS 650.69 / DSM 40230 / JCM 4526 / NBRC 13096 / PD 04745) [TaxId:953739]
    Gene: SVEN_3933
    Database cross-references and differences (RAF-indexed):
    • Uniprot F2RFR7 (Start-175)
      • engineered mutation (67)
  • Heterogens: C2E

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6pfvA (A:)
mpqhtsgsdraavppaargtvrppaptsldelwrsyketgderlreqlilhysplvkyva
grvsvglpsnveqadfvssgvfglidaiekfdveravkfetyaitrirgamidelraldw
iprsvrqkarnverayatleaqlgrtpsetevaaemdisledlhavfsqlslanvvalee
llhvggeggdrlslmdtledtaadnpvevaedrelrrllaraintlperektvvtlyyye
gltlaeighvlgvtesrvsqihtksvlqlrakladvgr

    Sequence, based on observed residues (ATOM records):
    >6pfvA (A:)
paptsldelwrsyketgderlreqlilhysplvkyvagrvsvglpsnveqadfvssgvfg
lidaiekfdveravkfetyaitrirgamidelraldwiprsvrqkarnverayatleaql
grtpsetevaaemdisledlhavfsqlslanvvaleellhrrllaraintlperektvvt
lyyyegltlaeighvlgvtesrvsqihtksvlqlraklad

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6pfvB (B:)
gsrppaqrtaesalpdrarpelgalrlpelrtlrreaqsdeadlsyvrrmlqgridilra
elarrtdgeapvldrlseiladvpsrhrssarhvtlstprgeeyrrlaaemlsevelsdl
tartdeelhaamgrlagyeqqisrrrhhlqrtaddcsaeiarryregeaqvddlla

    Sequence, based on observed residues (ATOM records):
    >6pfvB (B:)
rarpelgalrlpelrtlrreaqsdeadlsyvrrmlqgridilraelarrtdgeapvldrl
seiladvpsrhrssarhvtlstprgeeyrrlaaemlsevelsdltartdeelhaamgrla
gyeqqisrrrhhlqrtaddcsaeiarryregeaqvddlla

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6pfvD (D:)
mpqhtsgsdraavppaargtvrppaptsldelwrsyketgderlreqlilhysplvkyva
grvsvglpsnveqadfvssgvfglidaiekfdveravkfetyaitrirgamidelraldw
iprsvrqkarnverayatleaqlgrtpsetevaaemdisledlhavfsqlslanvvalee
llhvggeggdrlslmdtledtaadnpvevaedrelrrllaraintlperektvvtlyyye
gltlaeighvlgvtesrvsqihtksvlqlrakladvgr

    Sequence, based on observed residues (ATOM records):
    >6pfvD (D:)
paptsldelwrsyketgderlreqlilhysplvkyvagrvsvglpsnveqadfvssgvfg
lidaiekfdveravkfetyaitrirgamidelraldwiprsvrqkarnverayatleaql
grtpsetevaaemdisledlhavfsqlslanvvaleellhrrllaraintlperektvvt
lyyyegltlaeighvlgvtesrvsqihtksvlqlraklad

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6pfvE (E:)
gsrppaqrtaesalpdrarpelgalrlpelrtlrreaqsdeadlsyvrrmlqgridilra
elarrtdgeapvldrlseiladvpsrhrssarhvtlstprgeeyrrlaaemlsevelsdl
tartdeelhaamgrlagyeqqisrrrhhlqrtaddcsaeiarryregeaqvddlla

    Sequence, based on observed residues (ATOM records):
    >6pfvE (E:)
arpelgalrlpelrtlrreaqsdeadlsyvrrmlqgridilraelarrtdgeapvldrls
eiladvpsrhrssarhvtlstprgeeyrrlaaemlsevelsdltartdeelhaamgrlag
yeqqisrrrhhlqrtaddcsaeiarryregeaqvddlla

  • Chain 'G':
    Sequence, based on SEQRES records:
    >6pfvG (G:)
mpqhtsgsdraavppaargtvrppaptsldelwrsyketgderlreqlilhysplvkyva
grvsvglpsnveqadfvssgvfglidaiekfdveravkfetyaitrirgamidelraldw
iprsvrqkarnverayatleaqlgrtpsetevaaemdisledlhavfsqlslanvvalee
llhvggeggdrlslmdtledtaadnpvevaedrelrrllaraintlperektvvtlyyye
gltlaeighvlgvtesrvsqihtksvlqlrakladvgr

    Sequence, based on observed residues (ATOM records):
    >6pfvG (G:)
vrppaptsldelwrsyketgderlreqlilhysplvkyvagrvsvglpsnveqadfvssg
vfglidaiekfdveravkfetyaitrirgamidelraldwiprsvrqkarnverayatle
aqlgrtpsetevaaemdisledlhavfsqlslanvvaleellhrrllaraintlperekt
vvtlyyyegltlaeighvlgvtesrvsqihtksvlqlraklad

  • Chain 'T':
    Sequence, based on SEQRES records:
    >6pfvT (T:)
gsrppaqrtaesalpdrarpelgalrlpelrtlrreaqsdeadlsyvrrmlqgridilra
elarrtdgeapvldrlseiladvpsrhrssarhvtlstprgeeyrrlaaemlsevelsdl
tartdeelhaamgrlagyeqqisrrrhhlqrtaddcsaeiarryregeaqvddlla

    Sequence, based on observed residues (ATOM records):
    >6pfvT (T:)
alpdrarpelgalrlpelrtlrreaqsdeadlsyvrrmlqgridilraelarrtdgeapv
ldrlseiladvpsrhrssarhvtlstprgeeyrrlaaemlsevelsdltartdeelhaam
grlagyeqqisrrrhhlqrtaddcsaeiarryregeaqvddlla