PDB entry 6pdy

View 6pdy on RCSB PDB site
Description: msp1-substrate complex in open conformation
Deposited on 2019-06-19, released 2020-02-12
The last revision was dated 2020-02-12, with a file datestamp of 2020-02-07.
Experiment type: EM
Resolution: 3.7 Å
R-factor: N/A
AEROSPACI score: 0.08 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Membrane-spanning ATPase-like protein
    Species: CHAETOMIUM THERMOPHILUM [TaxId:209285]
    Gene: CTHT_0034230
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Membrane-spanning ATPase-like protein
    Species: CHAETOMIUM THERMOPHILUM [TaxId:209285]
    Gene: CTHT_0034230
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Membrane-spanning ATPase-like protein
    Species: CHAETOMIUM THERMOPHILUM [TaxId:209285]
    Gene: CTHT_0034230
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Membrane-spanning ATPase-like protein
    Species: CHAETOMIUM THERMOPHILUM [TaxId:209285]
    Gene: CTHT_0034230
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: Membrane-spanning ATPase-like protein
    Species: CHAETOMIUM THERMOPHILUM [TaxId:209285]
    Gene: CTHT_0034230
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: Membrane-spanning ATPase-like protein
    Species: CHAETOMIUM THERMOPHILUM [TaxId:209285]
    Gene: CTHT_0034230
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: Unknown E. coli peptide
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
    • PDB 6PDY (0-9)
  • Heterogens: ADP, BEF, MG

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6pdyA (A:)
gsiapylvkiidpdyeknertrikaqenlrrirrkqiaekgdnedgtddpsrrrkiddlv
lneyenqvalevvapedipvgfndigglddiieelketiiypltmphlykhggallaaps
gvllygppgcgktmlakavahesgasfinlhistltekwygdsnkivravfslakklqps
iifideidavlgtrrsgeheasgmvkaefmtlwdgltstnasgvpnrivvlgatnrindi
deailrrmpkqfpvplpgleqrrrilelvlrgtkrdpdfdldyiarvtagmsgsdiketc
rdaamapmreyirqhrasgkplseinpddvrgirtedffgrrggkilseipprqtgyvvq
sknsseggyeevedddeqgtast

    Sequence, based on observed residues (ATOM records):
    >6pdyA (A:)
rtrikaqenlrrirrkqiddlvlneyenqvalevvapedipvgfndigglddiieelket
iiypltaapsgvllygppgcgktmlakavahesgasfinlhistltekwygdsnkivrav
fslakklqpsiifideidavlgeasgmvkaefmtlwdgvpnrivvlgatnrindideail
rrmpkqfpvplpgleqrrrilelvlrgtkrdpdfdldyiarvtagmsgsdiketcrdaam
apmreyirqhrasgkplseinp

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6pdyB (B:)
gsiapylvkiidpdyeknertrikaqenlrrirrkqiaekgdnedgtddpsrrrkiddlv
lneyenqvalevvapedipvgfndigglddiieelketiiypltmphlykhggallaaps
gvllygppgcgktmlakavahesgasfinlhistltekwygdsnkivravfslakklqps
iifideidavlgtrrsgeheasgmvkaefmtlwdgltstnasgvpnrivvlgatnrindi
deailrrmpkqfpvplpgleqrrrilelvlrgtkrdpdfdldyiarvtagmsgsdiketc
rdaamapmreyirqhrasgkplseinpddvrgirtedffgrrggkilseipprqtgyvvq
sknsseggyeevedddeqgtast

    Sequence, based on observed residues (ATOM records):
    >6pdyB (B:)
eknertrikaqenlrrirrkqidlvlneyenqvalevvapedipvgfndigglddiieel
ketiiypltmphlykhggallaapsgvllygppgcgktmlakavahesgasfinlhistl
tekwygdsnkivravfslakklqpsiifideidavlgtrrsgeheasgmvkaefmtlwdg
ltstnasgvpnrivvlgatnrindideailrrmpkqfpvplpgleqrrrilelvlrgtkr
dpdfdldyiarvtagmsgsdiketcrdaamapmreyirqhra

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6pdyC (C:)
gsiapylvkiidpdyeknertrikaqenlrrirrkqiaekgdnedgtddpsrrrkiddlv
lneyenqvalevvapedipvgfndigglddiieelketiiypltmphlykhggallaaps
gvllygppgcgktmlakavahesgasfinlhistltekwygdsnkivravfslakklqps
iifideidavlgtrrsgeheasgmvkaefmtlwdgltstnasgvpnrivvlgatnrindi
deailrrmpkqfpvplpgleqrrrilelvlrgtkrdpdfdldyiarvtagmsgsdiketc
rdaamapmreyirqhrasgkplseinpddvrgirtedffgrrggkilseipprqtgyvvq
sknsseggyeevedddeqgtast

    Sequence, based on observed residues (ATOM records):
    >6pdyC (C:)
eknertrikaqenlrrirrkqidlvlneyenqvalevvapedipvgfndigglddiieel
ketiiypltmphlykhggallaapsgvllygppgcgktmlakavahesgasfinlhistl
tekwygdsnkivravfslakklqpsiifideidavlgtrrsgeheasgmvkaefmtlwdg
ltstnasgvpnrivvlgatnrindideailrrmpkqfpvplpgleqrrrilelvlrgtkr
dpdfdldyiarvtagmsgsdiketcrdaamapmreyirqhrasgkplseinpddvrgi

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6pdyD (D:)
gsiapylvkiidpdyeknertrikaqenlrrirrkqiaekgdnedgtddpsrrrkiddlv
lneyenqvalevvapedipvgfndigglddiieelketiiypltmphlykhggallaaps
gvllygppgcgktmlakavahesgasfinlhistltekwygdsnkivravfslakklqps
iifideidavlgtrrsgeheasgmvkaefmtlwdgltstnasgvpnrivvlgatnrindi
deailrrmpkqfpvplpgleqrrrilelvlrgtkrdpdfdldyiarvtagmsgsdiketc
rdaamapmreyirqhrasgkplseinpddvrgirtedffgrrggkilseipprqtgyvvq
sknsseggyeevedddeqgtast

    Sequence, based on observed residues (ATOM records):
    >6pdyD (D:)
dyeknertrikaqenlrrirrkqlvlneyenqvalevvapedipvgfndigglddiieel
ketiiypltmphlykhggallaapsgvllygppgcgktmlakavahesgasfinlhistl
tekwygdsnkivravfslakklqpsiifideidavlgtrrsgeheasgmvkaefmtlwdg
ltstnasgvpnrivvlgatnrindideailrrmpkqfpvplpgleqrrrilelvlrgtkr
dpdfdldyiarvtagmsgsdiketcrdaamapmreyirqhrasgkplseinpd

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6pdyE (E:)
gsiapylvkiidpdyeknertrikaqenlrrirrkqiaekgdnedgtddpsrrrkiddlv
lneyenqvalevvapedipvgfndigglddiieelketiiypltmphlykhggallaaps
gvllygppgcgktmlakavahesgasfinlhistltekwygdsnkivravfslakklqps
iifideidavlgtrrsgeheasgmvkaefmtlwdgltstnasgvpnrivvlgatnrindi
deailrrmpkqfpvplpgleqrrrilelvlrgtkrdpdfdldyiarvtagmsgsdiketc
rdaamapmreyirqhrasgkplseinpddvrgirtedffgrrggkilseipprqtgyvvq
sknsseggyeevedddeqgtast

    Sequence, based on observed residues (ATOM records):
    >6pdyE (E:)
eknertrikaqenlrrirrkqidlvlneyenqvalevvapedipvgfndigglddiieel
ketiiypltmphlykhggallaapsgvllygppgcgktmlakavahesgasfinlhistl
tekwygdsnkivravfslakklqpsiifideidavlgtrrsgeheasgmvkaefmtlwdg
ltstnasgvpnrivvlgatnrindideailrrmpkqfpvplpgleqrrrilelvlrgtkr
dpdfdldyiarvtagmsgsdiketcrdaamapmreyirq

  • Chain 'F':
    Sequence, based on SEQRES records:
    >6pdyF (F:)
gsiapylvkiidpdyeknertrikaqenlrrirrkqiaekgdnedgtddpsrrrkiddlv
lneyenqvalevvapedipvgfndigglddiieelketiiypltmphlykhggallaaps
gvllygppgcgktmlakavahesgasfinlhistltekwygdsnkivravfslakklqps
iifideidavlgtrrsgeheasgmvkaefmtlwdgltstnasgvpnrivvlgatnrindi
deailrrmpkqfpvplpgleqrrrilelvlrgtkrdpdfdldyiarvtagmsgsdiketc
rdaamapmreyirqhrasgkplseinpddvrgirtedffgrrggkilseipprqtgyvvq
sknsseggyeevedddeqgtast

    Sequence, based on observed residues (ATOM records):
    >6pdyF (F:)
neyenqvalevvapedipvgfndigglddiieelketiiypltmphlykhggallaapsg
vllygppgcgktmlakavahesgasfinlhistltekwygdsnkivravfslakklqpsi
ifideidavsgmvkaefmtlwdglgvpnrivvlgatnrindideailrrmpkqfpvplpg
leqrrrilelvlrgtkrdpdfdldyiarvtagmsgsdiketcrdaamapmreyirq

  • Chain 'G':
    Sequence; same for both SEQRES and ATOM records:
    >6pdyG (G:)
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