PDB entry 6pbz

View 6pbz on RCSB PDB site
Description: Crystal structure of Escherichia coli GppA
Class: hydrolase
Keywords: pppGpp, ppGpp, PPX, GppA, HYDROLASE
Deposited on 2019-06-15, released 2019-11-20
The last revision prior to the SCOPe 2.07 freeze date was dated 2019-11-20, with a file datestamp of 2019-11-15.
Experiment type: XRAY
Resolution: 2.48 Å
R-factor: N/A
AEROSPACI score: 0.2 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Gene: gppA, gpp, b3779, JW5603
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d6pbza1, d6pbza2, d6pbza3
  • Chain 'B':
    Compound: Guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Gene: gppA, gpp, b3779, JW5603
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d6pbzb1, d6pbzb2, d6pbzb3
  • Chain 'C':
    Compound: Guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Gene: gppA, gpp, b3779, JW5603
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d6pbzc1, d6pbzc2, d6pbzc3
  • Chain 'D':
    Compound: Guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Gene: gppA, gpp, b3779, JW5603
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d6pbzd1, d6pbzd2, d6pbzd3
  • Heterogens: CL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6pbzA (A:)
mgstsslyaaidlgsnsfhmlvvrevagsiqtltrikrkvrlaaglnsenalsneamerg
wqclrlfaerlqdippsqirvvatatlrlavnagdfiakaqeilgcpvqvisgeeearli
yqgvahttggadqrlvvdiggastelvtgtgaqttslfslsmgcvtwleryfadrnlgqe
nfdaaekaarevlrpvadelryhgwkvcvgasgtvqalqeimmaqgmderitleklqqlk
qraihcgrleeleidgltleralvfpsglailiaiftelniqcmtlaggalreglvygml
hlaveqdirsrtlrniqrrfmididqaqrvakvaanffdqvenewhleaisrdllisacq
lheiglsvdfkqapqhaaylvrnldlpgftpaqkkllatlllnqtnpvdlsslhqqnavp
prvaeqlcrllrlaiifasrrrddlvpemtlqanhelltltlpqgwltqhplgkeiiaqe
sqwqsyvhwplevh

    Sequence, based on observed residues (ATOM records): (download) 
    >6pbzA (A:)
slyaaidlgsnsfhmlvvrevagsiqtltrikrkvrlaaglnsenalsneamergwqclr
lfaerlqdippsqirvvatatlrlavnagdfiakaqeilgcpvqvisgeeearliyqgva
httggadqrlvvdiggastelvtgtgaqttslfslsmgcvtwleryfadrnlgqenfdaa
ekaarevlrpvadelryhgwkvcvgasgtvqalqeimmaqgmderitleklqqlkqraih
cgrleeleidgltleralvfpsglailiaiftelniqcmtlaggalreglvygmlhqdir
srtlrniqrrfmididqaqrvakvaanffdqvenewhleaisrdllisacqlheiglsvd
fkqapqhaaylvrnldlpgftpaqkkllatlllnqtnpvdlsslhqqnavpprvaeqlcr
llrlaiifasrrrddlvpemtlqanhelltltlpqgwltqhplgkeiiaqesqwqsyvhw
plevh

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6pbzB (B:)
mgstsslyaaidlgsnsfhmlvvrevagsiqtltrikrkvrlaaglnsenalsneamerg
wqclrlfaerlqdippsqirvvatatlrlavnagdfiakaqeilgcpvqvisgeeearli
yqgvahttggadqrlvvdiggastelvtgtgaqttslfslsmgcvtwleryfadrnlgqe
nfdaaekaarevlrpvadelryhgwkvcvgasgtvqalqeimmaqgmderitleklqqlk
qraihcgrleeleidgltleralvfpsglailiaiftelniqcmtlaggalreglvygml
hlaveqdirsrtlrniqrrfmididqaqrvakvaanffdqvenewhleaisrdllisacq
lheiglsvdfkqapqhaaylvrnldlpgftpaqkkllatlllnqtnpvdlsslhqqnavp
prvaeqlcrllrlaiifasrrrddlvpemtlqanhelltltlpqgwltqhplgkeiiaqe
sqwqsyvhwplevh

    Sequence, based on observed residues (ATOM records): (download) 
    >6pbzB (B:)
slyaaidlgsnsfhmlvvresiqtltrikrkvrlaaglnsenalsneamergwqclrlfa
erlqdippsqirvvatatlrlavnagdfiakaqeilgcpvqvisgeeearliyqgvahtt
ggadqrlvvdiggastelvtgtgaqttslfslsmgcvtwleryfadrnlgqenfdaaeka
arevlrpvadelryhgwkvcvgasgtvqalqeimmaqgmderitleklqqlkqraihcgr
leeleidgltleralvfpsglailiaiftelniqcmtlaggalreglvygmlhlqdirsr
tlrniqrrfmididqaqrvakvaanffdqvenewhleaisrdllisacqlheiglsvdfk
qapqhaaylvrnldlpgftpaqkkllatlllnqtnpvdlsslhqqnavpprvaeqlcrll
rlaiifasrrrddlvpemtlqanhelltltlpqgwltqhplgkeiiaqesqwqsyvhwpl
evh

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >6pbzC (C:)
mgstsslyaaidlgsnsfhmlvvrevagsiqtltrikrkvrlaaglnsenalsneamerg
wqclrlfaerlqdippsqirvvatatlrlavnagdfiakaqeilgcpvqvisgeeearli
yqgvahttggadqrlvvdiggastelvtgtgaqttslfslsmgcvtwleryfadrnlgqe
nfdaaekaarevlrpvadelryhgwkvcvgasgtvqalqeimmaqgmderitleklqqlk
qraihcgrleeleidgltleralvfpsglailiaiftelniqcmtlaggalreglvygml
hlaveqdirsrtlrniqrrfmididqaqrvakvaanffdqvenewhleaisrdllisacq
lheiglsvdfkqapqhaaylvrnldlpgftpaqkkllatlllnqtnpvdlsslhqqnavp
prvaeqlcrllrlaiifasrrrddlvpemtlqanhelltltlpqgwltqhplgkeiiaqe
sqwqsyvhwplevh

    Sequence, based on observed residues (ATOM records): (download) 
    >6pbzC (C:)
slyaaidlgsnsfhmlvvrevagsiqtltrikrkvrlaaglnsenalsneamergwqclr
lfaerlqdippsqirvvatatlrlavnagdfiakaqeilgcpvqvisgeeearliyqgva
httggadqrlvvdiggastelvtgtgaqttslfslsmgcvtwleryfalgqenfdaaeka
arevlrpvadelryhgwkvcvgasgtvqalqeimmaqgmderitleklqqlkqraihcgr
tleralvfpsglailiaiftelniqcmtlaggalreglvygmlhlaveqdirsrtlrniq
rrfmididqaqrvakvaanffdqvenewhleaisrdllisacqlheiglsvdfkqapqha
aylvrnldlpgftpaqkkllatlllnqtnpvdlsslhqqnavpprvaeqlcrllrlaiif
asrrrddlvpemtlqanhelltltlpqgwltqhplgkeiiaqesqwqsyvhwplevh

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >6pbzD (D:)
mgstsslyaaidlgsnsfhmlvvrevagsiqtltrikrkvrlaaglnsenalsneamerg
wqclrlfaerlqdippsqirvvatatlrlavnagdfiakaqeilgcpvqvisgeeearli
yqgvahttggadqrlvvdiggastelvtgtgaqttslfslsmgcvtwleryfadrnlgqe
nfdaaekaarevlrpvadelryhgwkvcvgasgtvqalqeimmaqgmderitleklqqlk
qraihcgrleeleidgltleralvfpsglailiaiftelniqcmtlaggalreglvygml
hlaveqdirsrtlrniqrrfmididqaqrvakvaanffdqvenewhleaisrdllisacq
lheiglsvdfkqapqhaaylvrnldlpgftpaqkkllatlllnqtnpvdlsslhqqnavp
prvaeqlcrllrlaiifasrrrddlvpemtlqanhelltltlpqgwltqhplgkeiiaqe
sqwqsyvhwplevh

    Sequence, based on observed residues (ATOM records): (download) 
    >6pbzD (D:)
slyaaidlgsnsfhmlvvrevagsiqtltrikrkvrlaaglnsenalsneamergwqclr
lfaerlqdippsqirvvatatlrlavnagdfiakaqeilgcpvqvisgeeearliyqgva
httggadqrlvvdielvtgtgaqttslfslsmgcvtwlelgqenfdaaekaarevlrpva
delryhgwkvcvgasgtvqalqeimmaqgitleklqqlkqraihcgalvfpsglailiai
ftelniqcmtlaggalreglvygmlhdirsrtlrniqrrfmididqaqrvakvaanffdq
venewhleaisrdllisacqlheiglsvdfkqapqhaaylvrnldlpgftpaqkkllatl
llnqtnpvdlsslhqqnavpprvaeqlcrllrlaiifasrrrddlvpemtlqanhelltl
tlpqgwltqhplgkeiiaqesqwqsyvhwplevh