PDB entry 6pbd

View 6pbd on RCSB PDB site
Description: dna n6-adenine methyltransferase ccrm in complex with double-stranded dna oligonucleotide containing its recognition sequence gaatc
Deposited on 2019-06-13, released 2019-10-23
The last revision was dated 2020-01-01, with a file datestamp of 2019-12-27.
Experiment type: XRAY
Resolution: 2.34 Å
R-factor: N/A
AEROSPACI score: 0.24 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Modification methylase CcrMI
    Species: Caulobacter vibrioides [TaxId:155892]
    Gene: ccrMIM, ccrM, CC_0378
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Modification methylase CcrMI
    Species: Caulobacter vibrioides [TaxId:155892]
    Gene: ccrMIM, ccrM, CC_0378
    Database cross-references and differences (RAF-indexed):
  • Chain 'X':
    Compound: DNA (5'-d(*cp*gp*ap*tp*tp*cp*ap*ap*tp*gp*ap*ap*tp*cp*cp*cp*ap*ap*g)-3')
    Species: synthetic construct, synthetic [TaxId:32630]
  • Chain 'Y':
    Compound: DNA (5'-d(*gp*cp*tp*tp*gp*gp*gp*ap*tp*tp*cp*ap*tp*tp*gp*ap*ap*tp*c)-3')
    Species: synthetic construct, synthetic [TaxId:32630]
  • Heterogens: SFG, EDO, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6pbdA (A:)
mghhhhhhmkfgpetiihgdcieqmnalpeksvdlifadppynlqlggdllrpdnskvda
vddhwdqfesfaaydkftrewlkaarrvlkddgaiwvigsyhnifrvgvavqdlgfwiln
divwrksnpmpnfkgtrfanahetliwasksqnakrytfnydalkmandevqmrsdwtip
lctgeerikgadgqkahptqkpeallyrvilsttkpgdvildpffgvgttgaaakrlgrk
figiereaeylehakariakvvpiapedldvmgskraeprvpfgtiveagllspgdtlyc
skgthvakvrpdgsitvgdlsgsihkigalvqsapacngwtywhfktdaglapidvlraq
vragmn

    Sequence, based on observed residues (ATOM records):
    >6pbdA (A:)
mkfgpetiihgdcieqmnalpeksvdlifadppynlqlggdllrpdnskvdavddhwdqf
esfaaydkftrewlkaarrvlkddgaiwvigsyhnifrvgvavqdlgfwilndivwrksn
pmpnfkgtrfanahetliwasksqnakrytfnydalkmandevqmrsdwtiplctgeeri
kgadgqkahptqkpeallyrvilsttkpgdvildpffgvgttgaaakrlgrkfigierea
eylehakariakvvpiapedraeprvpfgtiveagllspgdtlycskgthvakvrpdgsi
tvgdlsgsihkigalvqsapacngwtywhfktdaglapidvlraqvragm

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6pbdB (B:)
mghhhhhhmkfgpetiihgdcieqmnalpeksvdlifadppynlqlggdllrpdnskvda
vddhwdqfesfaaydkftrewlkaarrvlkddgaiwvigsyhnifrvgvavqdlgfwiln
divwrksnpmpnfkgtrfanahetliwasksqnakrytfnydalkmandevqmrsdwtip
lctgeerikgadgqkahptqkpeallyrvilsttkpgdvildpffgvgttgaaakrlgrk
figiereaeylehakariakvvpiapedldvmgskraeprvpfgtiveagllspgdtlyc
skgthvakvrpdgsitvgdlsgsihkigalvqsapacngwtywhfktdaglapidvlraq
vragmn

    Sequence, based on observed residues (ATOM records):
    >6pbdB (B:)
fgpetiihgdcieqmnalpeksvdlifadppynlqlsfaaydkftrewlkaarrvlkddg
aiwvigsyhnifrvgvavqdlgfwilndivwrksnpmpnfkgtrfanahetliwasksqn
akrytfnydalkmandevqmrsdwtiplctgeerikgadgqkahptqkpeallyrvilst
tkpgdvildpffgvgttgaaakrlgrkfigiereaeylehakariakvvpiapedldvmg
skraeprvpfgtiveagllspgdtlycskgthvakvrpdgsitvgdlsgsihkigalvqs
apacngwtywhfktdaglapidvlraqvrag

  • Chain 'X':
    No sequence available.

  • Chain 'Y':
    No sequence available.