PDB entry 6pam

View 6pam on RCSB PDB site
Description: structure of a bacterial atm1-family abc transporter with mgadp bound
Deposited on 2019-06-11, released 2020-06-24
The last revision was dated 2020-08-26, with a file datestamp of 2020-08-21.
Experiment type: XRAY
Resolution: 3.7 Å
R-factor: N/A
AEROSPACI score: 0.17 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: ATM1-type heavy metal exporter
    Species: Novosphingobium aromaticivorans (strain ATCC 700278 / DSM 12444 / CIP 105152 / NBRC 16084 / F199) [TaxId:279238]
    Gene: ATM1, Saro_2631
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q2G506
      • engineered mutation (526)
  • Chain 'B':
    Compound: ATM1-type heavy metal exporter
    Species: Novosphingobium aromaticivorans (strain ATCC 700278 / DSM 12444 / CIP 105152 / NBRC 16084 / F199) [TaxId:279238]
    Gene: ATM1, Saro_2631
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q2G506
      • engineered mutation (526)
  • Chain 'C':
    Compound: ATM1-type heavy metal exporter
    Species: Novosphingobium aromaticivorans (strain ATCC 700278 / DSM 12444 / CIP 105152 / NBRC 16084 / F199) [TaxId:279238]
    Gene: ATM1, Saro_2631
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q2G506
      • engineered mutation (526)
  • Chain 'D':
    Compound: ATM1-type heavy metal exporter
    Species: Novosphingobium aromaticivorans (strain ATCC 700278 / DSM 12444 / CIP 105152 / NBRC 16084 / F199) [TaxId:279238]
    Gene: ATM1, Saro_2631
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q2G506
      • engineered mutation (526)
  • Chain 'E':
    Compound: ATM1-type heavy metal exporter
    Species: Novosphingobium aromaticivorans (strain ATCC 700278 / DSM 12444 / CIP 105152 / NBRC 16084 / F199) [TaxId:279238]
    Gene: ATM1, Saro_2631
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q2G506
      • engineered mutation (526)
  • Chain 'F':
    Compound: ATM1-type heavy metal exporter
    Species: Novosphingobium aromaticivorans (strain ATCC 700278 / DSM 12444 / CIP 105152 / NBRC 16084 / F199) [TaxId:279238]
    Gene: ATM1, Saro_2631
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q2G506
      • engineered mutation (526)
  • Chain 'G':
    Compound: ATM1-type heavy metal exporter
    Species: Novosphingobium aromaticivorans (strain ATCC 700278 / DSM 12444 / CIP 105152 / NBRC 16084 / F199) [TaxId:279238]
    Gene: ATM1, Saro_2631
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q2G506
      • engineered mutation (526)
  • Chain 'H':
    Compound: ATM1-type heavy metal exporter
    Species: Novosphingobium aromaticivorans (strain ATCC 700278 / DSM 12444 / CIP 105152 / NBRC 16084 / F199) [TaxId:279238]
    Gene: ATM1, Saro_2631
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q2G506
      • engineered mutation (526)
  • Heterogens: ADP, MG

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6pamA (A:)
mppetatnpkdarhdgwqtlkrflpylwpadnavlrrrvvgailmvllgkattlalpfay
kkavdamtlgggaqpaltvalafvlayalgrfsgvlfdnlrnivfervgqdatrhlaenv
farlhklslrfhlarrtgevtkviergtksidtmlyfllfniaptvieltavivifwlnf
glglvtatilaviayvwttrtitewrthlrekmnrldgqalaravdsllnyetvkyfgae
sreearyasaarayadaavksenslgllniaqalivnllmagamawtvygwsqgkltvgd
lvfvntyltqlfrpldmlgmvyrtirqglidmaemfrlidthievadvpnapalvvnrps
vtfdnvvfgydrdreilhglsfevaagsrvaivgpsgagkstiarllfrfydpwegrili
dgqdiahvtqtslraalgivpqdsvlfndtigyniaygrdgasraevdaaakgaaiadfi
arlpqgydtevgerglklsggekqrvaiartlvknppillfdeatscldtrteqdilstm
ravashrttisiahrlstiadsdtilvldqgrlaeqgshldllrrdglyaemwarqaaes
aevseaaehhhhhh

    Sequence, based on observed residues (ATOM records):
    >6pamA (A:)
rhdgwqtlkrflpylwpadnavlrrrvvgailmvllgkattlalpfaykkavdamtlggg
aqpaltvalafvlayalgrfsgvlfdnlrnivfervgqdatrhlaenvfarlhklslrfh
larrtgevtkviergtksidtmlyfllfniaptvieltavivifwlnfglglvtatilav
iayvwttrtitewrthlrekmnrldgqalaravdsllnyetvkyfgaesreearyasaar
ayadaavksenslgllniaqalivnllmagamawtvygwsqgkltvgdlvfvntyltqlf
rpldmlgmvyrtirqglidmaemfrlidthievadvpnapalvvnrpsvtfdnvvfgydr
dreilhglsfevaagsrvaivgpsgagkstiarllfrfydpwegrilidgqdiahvtqts
lraalgivpqdsvlfndtigyniaygrdgasraevdaaakgaaiadfiarlpqgydtevg
erglklsggekqrvaiartlvknppillfdeatscldtrteqdilstmravashrttisi
ahrlstiadsdtilvldqgrlaeqgshldllrrdglyaemwarqaa

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6pamB (B:)
mppetatnpkdarhdgwqtlkrflpylwpadnavlrrrvvgailmvllgkattlalpfay
kkavdamtlgggaqpaltvalafvlayalgrfsgvlfdnlrnivfervgqdatrhlaenv
farlhklslrfhlarrtgevtkviergtksidtmlyfllfniaptvieltavivifwlnf
glglvtatilaviayvwttrtitewrthlrekmnrldgqalaravdsllnyetvkyfgae
sreearyasaarayadaavksenslgllniaqalivnllmagamawtvygwsqgkltvgd
lvfvntyltqlfrpldmlgmvyrtirqglidmaemfrlidthievadvpnapalvvnrps
vtfdnvvfgydrdreilhglsfevaagsrvaivgpsgagkstiarllfrfydpwegrili
dgqdiahvtqtslraalgivpqdsvlfndtigyniaygrdgasraevdaaakgaaiadfi
arlpqgydtevgerglklsggekqrvaiartlvknppillfdeatscldtrteqdilstm
ravashrttisiahrlstiadsdtilvldqgrlaeqgshldllrrdglyaemwarqaaes
aevseaaehhhhhh

    Sequence, based on observed residues (ATOM records):
    >6pamB (B:)
rhdgwqtlkrflpylwpadnavlrrrvvgailmvllgkattlalpfaykkavdamtlggg
aqpaltvalafvlayalgrfsgvlfdnlrnivfervgqdatrhlaenvfarlhklslrfh
larrtgevtkviergtksidtmlyfllfniaptvieltavivifwlnfglglvtatilav
iayvwttrtitewrthlrekmnrldgqalaravdsllnyetvkyfgaesreearyasaar
ayadaavksenslgllniaqalivnllmagamawtvygwsqgkltvgdlvfvntyltqlf
rpldmlgmvyrtirqglidmaemfrlidthievadvpnapalvvnrpsvtfdnvvfgydr
dreilhglsfevaagsrvaivgpsgagkstiarllfrfydpwegrilidgqdiahvtqts
lraalgivpqdsvlfndtigyniaygrdgasraevdaaakgaaiadfiarlpqgydtevg
erglklsggekqrvaiartlvknppillfdeatscldtrteqdilstmravashrttisi
ahrlstiadsdtilvldqgrlaeqgshldllrrdglyaemwarqaa

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6pamC (C:)
mppetatnpkdarhdgwqtlkrflpylwpadnavlrrrvvgailmvllgkattlalpfay
kkavdamtlgggaqpaltvalafvlayalgrfsgvlfdnlrnivfervgqdatrhlaenv
farlhklslrfhlarrtgevtkviergtksidtmlyfllfniaptvieltavivifwlnf
glglvtatilaviayvwttrtitewrthlrekmnrldgqalaravdsllnyetvkyfgae
sreearyasaarayadaavksenslgllniaqalivnllmagamawtvygwsqgkltvgd
lvfvntyltqlfrpldmlgmvyrtirqglidmaemfrlidthievadvpnapalvvnrps
vtfdnvvfgydrdreilhglsfevaagsrvaivgpsgagkstiarllfrfydpwegrili
dgqdiahvtqtslraalgivpqdsvlfndtigyniaygrdgasraevdaaakgaaiadfi
arlpqgydtevgerglklsggekqrvaiartlvknppillfdeatscldtrteqdilstm
ravashrttisiahrlstiadsdtilvldqgrlaeqgshldllrrdglyaemwarqaaes
aevseaaehhhhhh

    Sequence, based on observed residues (ATOM records):
    >6pamC (C:)
rhdgwqtlkrflpylwpadnavlrrrvvgailmvllgkattlalpfaykkavdamtlggg
aqpaltvalafvlayalgrfsgvlfdnlrnivfervgqdatrhlaenvfarlhklslrfh
larrtgevtkviergtksidtmlyfllfniaptvieltavivifwlnfglglvtatilav
iayvwttrtitewrthlrekmnrldgqalaravdsllnyetvkyfgaesreearyasaar
ayadaavksenslgllniaqalivnllmagamawtvygwsqgkltvgdlvfvntyltqlf
rpldmlgmvyrtirqglidmaemfrlidthievadvpnapalvvnrpsvtfdnvvfgydr
dreilhglsfevaagsrvaivgpsgagkstiarllfrfydpwegrilidgqdiahvtqts
lraalgivpqdsvlfndtigyniaygrdgasraevdaaakgaaiadfiarlpqgydtevg
erglklsggekqrvaiartlvknppillfdeatscldtrteqdilstmravashrttisi
ahrlstiadsdtilvldqgrlaeqgshldllrrdglyaemwarqaaesae

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6pamD (D:)
mppetatnpkdarhdgwqtlkrflpylwpadnavlrrrvvgailmvllgkattlalpfay
kkavdamtlgggaqpaltvalafvlayalgrfsgvlfdnlrnivfervgqdatrhlaenv
farlhklslrfhlarrtgevtkviergtksidtmlyfllfniaptvieltavivifwlnf
glglvtatilaviayvwttrtitewrthlrekmnrldgqalaravdsllnyetvkyfgae
sreearyasaarayadaavksenslgllniaqalivnllmagamawtvygwsqgkltvgd
lvfvntyltqlfrpldmlgmvyrtirqglidmaemfrlidthievadvpnapalvvnrps
vtfdnvvfgydrdreilhglsfevaagsrvaivgpsgagkstiarllfrfydpwegrili
dgqdiahvtqtslraalgivpqdsvlfndtigyniaygrdgasraevdaaakgaaiadfi
arlpqgydtevgerglklsggekqrvaiartlvknppillfdeatscldtrteqdilstm
ravashrttisiahrlstiadsdtilvldqgrlaeqgshldllrrdglyaemwarqaaes
aevseaaehhhhhh

    Sequence, based on observed residues (ATOM records):
    >6pamD (D:)
rhdgwqtlkrflpylwpadnavlrrrvvgailmvllgkattlalpfaykkavdamtlggg
aqpaltvalafvlayalgrfsgvlfdnlrnivfervgqdatrhlaenvfarlhklslrfh
larrtgevtkviergtksidtmlyfllfniaptvieltavivifwlnfglglvtatilav
iayvwttrtitewrthlrekmnrldgqalaravdsllnyetvkyfgaesreearyasaar
ayadaavksenslgllniaqalivnllmagamawtvygwsqgkltvgdlvfvntyltqlf
rpldmlgmvyrtirqglidmaemfrlidthievadvpnapalvvnrpsvtfdnvvfgydr
dreilhglsfevaagsrvaivgpsgagkstiarllfrfydpwegrilidgqdiahvtqts
lraalgivpqdsvlfndtigyniaygrdgasraevdaaakgaaiadfiarlpqgydtevg
erglklsggekqrvaiartlvknppillfdeatscldtrteqdilstmravashrttisi
ahrlstiadsdtilvldqgrlaeqgshldllrrdglyaemwarqaa

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6pamE (E:)
mppetatnpkdarhdgwqtlkrflpylwpadnavlrrrvvgailmvllgkattlalpfay
kkavdamtlgggaqpaltvalafvlayalgrfsgvlfdnlrnivfervgqdatrhlaenv
farlhklslrfhlarrtgevtkviergtksidtmlyfllfniaptvieltavivifwlnf
glglvtatilaviayvwttrtitewrthlrekmnrldgqalaravdsllnyetvkyfgae
sreearyasaarayadaavksenslgllniaqalivnllmagamawtvygwsqgkltvgd
lvfvntyltqlfrpldmlgmvyrtirqglidmaemfrlidthievadvpnapalvvnrps
vtfdnvvfgydrdreilhglsfevaagsrvaivgpsgagkstiarllfrfydpwegrili
dgqdiahvtqtslraalgivpqdsvlfndtigyniaygrdgasraevdaaakgaaiadfi
arlpqgydtevgerglklsggekqrvaiartlvknppillfdeatscldtrteqdilstm
ravashrttisiahrlstiadsdtilvldqgrlaeqgshldllrrdglyaemwarqaaes
aevseaaehhhhhh

    Sequence, based on observed residues (ATOM records):
    >6pamE (E:)
rhdgwqtlkrflpylwpadnavlrrrvvgailmvllgkattlalpfaykkavdamtlggg
aqpaltvalafvlayalgrfsgvlfdnlrnivfervgqdatrhlaenvfarlhklslrfh
larrtgevtkviergtksidtmlyfllfniaptvieltavivifwlnfglglvtatilav
iayvwttrtitewrthlrekmnrldgqalaravdsllnyetvkyfgaesreearyasaar
ayadaavksenslgllniaqalivnllmagamawtvygwsqgkltvgdlvfvntyltqlf
rpldmlgmvyrtirqglidmaemfrlidthievadvpnapalvvnrpsvtfdnvvfgydr
dreilhglsfevaagsrvaivgpsgagkstiarllfrfydpwegrilidgqdiahvtqts
lraalgivpqdsvlfndtigyniaygrdgasraevdaaakgaaiadfiarlpqgydtevg
erglklsggekqrvaiartlvknppillfdeatscldtrteqdilstmravashrttisi
ahrlstiadsdtilvldqgrlaeqgshldllrrdglyaemwarqaaesa

  • Chain 'F':
    Sequence, based on SEQRES records:
    >6pamF (F:)
mppetatnpkdarhdgwqtlkrflpylwpadnavlrrrvvgailmvllgkattlalpfay
kkavdamtlgggaqpaltvalafvlayalgrfsgvlfdnlrnivfervgqdatrhlaenv
farlhklslrfhlarrtgevtkviergtksidtmlyfllfniaptvieltavivifwlnf
glglvtatilaviayvwttrtitewrthlrekmnrldgqalaravdsllnyetvkyfgae
sreearyasaarayadaavksenslgllniaqalivnllmagamawtvygwsqgkltvgd
lvfvntyltqlfrpldmlgmvyrtirqglidmaemfrlidthievadvpnapalvvnrps
vtfdnvvfgydrdreilhglsfevaagsrvaivgpsgagkstiarllfrfydpwegrili
dgqdiahvtqtslraalgivpqdsvlfndtigyniaygrdgasraevdaaakgaaiadfi
arlpqgydtevgerglklsggekqrvaiartlvknppillfdeatscldtrteqdilstm
ravashrttisiahrlstiadsdtilvldqgrlaeqgshldllrrdglyaemwarqaaes
aevseaaehhhhhh

    Sequence, based on observed residues (ATOM records):
    >6pamF (F:)
rhdgwqtlkrflpylwpadnavlrrrvvgailmvllgkattlalpfaykkavdamtlggg
aqpaltvalafvlayalgrfsgvlfdnlrnivfervgqdatrhlaenvfarlhklslrfh
larrtgevtkviergtksidtmlyfllfniaptvieltavivifwlnfglglvtatilav
iayvwttrtitewrthlrekmnrldgqalaravdsllnyetvkyfgaesreearyasaar
ayadaavksenslgllniaqalivnllmagamawtvygwsqgkltvgdlvfvntyltqlf
rpldmlgmvyrtirqglidmaemfrlidthievadvpnapalvvnrpsvtfdnvvfgydr
dreilhglsfevaagsrvaivgpsgagkstiarllfrfydpwegrilidgqdiahvtqts
lraalgivpqdsvlfndtigyniaygrdgasraevdaaakgaaiadfiarlpqgydtevg
erglklsggekqrvaiartlvknppillfdeatscldtrteqdilstmravashrttisi
ahrlstiadsdtilvldqgrlaeqgshldllrrdglyaemwarqaaesa

  • Chain 'G':
    Sequence, based on SEQRES records:
    >6pamG (G:)
mppetatnpkdarhdgwqtlkrflpylwpadnavlrrrvvgailmvllgkattlalpfay
kkavdamtlgggaqpaltvalafvlayalgrfsgvlfdnlrnivfervgqdatrhlaenv
farlhklslrfhlarrtgevtkviergtksidtmlyfllfniaptvieltavivifwlnf
glglvtatilaviayvwttrtitewrthlrekmnrldgqalaravdsllnyetvkyfgae
sreearyasaarayadaavksenslgllniaqalivnllmagamawtvygwsqgkltvgd
lvfvntyltqlfrpldmlgmvyrtirqglidmaemfrlidthievadvpnapalvvnrps
vtfdnvvfgydrdreilhglsfevaagsrvaivgpsgagkstiarllfrfydpwegrili
dgqdiahvtqtslraalgivpqdsvlfndtigyniaygrdgasraevdaaakgaaiadfi
arlpqgydtevgerglklsggekqrvaiartlvknppillfdeatscldtrteqdilstm
ravashrttisiahrlstiadsdtilvldqgrlaeqgshldllrrdglyaemwarqaaes
aevseaaehhhhhh

    Sequence, based on observed residues (ATOM records):
    >6pamG (G:)
rhdgwqtlkrflpylwpadnavlrrrvvgailmvllgkattlalpfaykkavdamtlggg
aqpaltvalafvlayalgrfsgvlfdnlrnivfervgqdatrhlaenvfarlhklslrfh
larrtgevtkviergtksidtmlyfllfniaptvieltavivifwlnfglglvtatilav
iayvwttrtitewrthlrekmnrldgqalaravdsllnyetvkyfgaesreearyasaar
ayadaavksenslgllniaqalivnllmagamawtvygwsqgkltvgdlvfvntyltqlf
rpldmlgmvyrtirqglidmaemfrlidthievadvpnapalvvnrpsvtfdnvvfgydr
dreilhglsfevaagsrvaivgpsgagkstiarllfrfydpwegrilidgqdiahvtqts
lraalgivpqdsvlfndtigyniaygrdgasraevdaaakgaaiadfiarlpqgydtevg
erglklsggekqrvaiartlvknppillfdeatscldtrteqdilstmravashrttisi
ahrlstiadsdtilvldqgrlaeqgshldllrrdglyaemwarqaaesae

  • Chain 'H':
    Sequence, based on SEQRES records:
    >6pamH (H:)
mppetatnpkdarhdgwqtlkrflpylwpadnavlrrrvvgailmvllgkattlalpfay
kkavdamtlgggaqpaltvalafvlayalgrfsgvlfdnlrnivfervgqdatrhlaenv
farlhklslrfhlarrtgevtkviergtksidtmlyfllfniaptvieltavivifwlnf
glglvtatilaviayvwttrtitewrthlrekmnrldgqalaravdsllnyetvkyfgae
sreearyasaarayadaavksenslgllniaqalivnllmagamawtvygwsqgkltvgd
lvfvntyltqlfrpldmlgmvyrtirqglidmaemfrlidthievadvpnapalvvnrps
vtfdnvvfgydrdreilhglsfevaagsrvaivgpsgagkstiarllfrfydpwegrili
dgqdiahvtqtslraalgivpqdsvlfndtigyniaygrdgasraevdaaakgaaiadfi
arlpqgydtevgerglklsggekqrvaiartlvknppillfdeatscldtrteqdilstm
ravashrttisiahrlstiadsdtilvldqgrlaeqgshldllrrdglyaemwarqaaes
aevseaaehhhhhh

    Sequence, based on observed residues (ATOM records):
    >6pamH (H:)
rhdgwqtlkrflpylwpadnavlrrrvvgailmvllgkattlalpfaykkavdamtlggg
aqpaltvalafvlayalgrfsgvlfdnlrnivfervgqdatrhlaenvfarlhklslrfh
larrtgevtkviergtksidtmlyfllfniaptvieltavivifwlnfglglvtatilav
iayvwttrtitewrthlrekmnrldgqalaravdsllnyetvkyfgaesreearyasaar
ayadaavksenslgllniaqalivnllmagamawtvygwsqgkltvgdlvfvntyltqlf
rpldmlgmvyrtirqglidmaemfrlidthievadvpnapalvvnrpsvtfdnvvfgydr
dreilhglsfevaagsrvaivgpsgagkstiarllfrfydpwegrilidgqdiahvtqts
lraalgivpqdsvlfndtigyniaygrdgasraevdaaakgaaiadfiarlpqgydtevg
erglklsggekqrvaiartlvknppillfdeatscldtrteqdilstmravashrttisi
ahrlstiadsdtilvldqgrlaeqgshldllrrdglyaemwarqaaesae